View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_high_23 (Length: 333)

Name: NF2683_high_23
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_high_23
NF2683_high_23
[»] chr4 (45 HSPs)
chr4 (231-320)||(54561810-54561899)
chr4 (231-318)||(29965839-29965926)
chr4 (28-103)||(51967572-51967647)
chr4 (28-103)||(56423600-56423675)
chr4 (28-103)||(6486962-6487037)
chr4 (28-103)||(54561613-54561688)
chr4 (231-320)||(8084860-8084949)
chr4 (256-320)||(40163339-40163403)
chr4 (256-320)||(40487065-40487129)
chr4 (256-320)||(56423418-56423482)
chr4 (28-103)||(41469961-41470036)
chr4 (256-320)||(6486759-6486823)
chr4 (28-103)||(25013849-25013924)
chr4 (28-103)||(26449011-26449086)
chr4 (28-103)||(29966044-29966119)
chr4 (28-103)||(40163164-40163239)
chr4 (28-103)||(40487309-40487384)
chr4 (231-317)||(872203-872289)
chr4 (28-97)||(8563003-8563073)
chr4 (256-318)||(41469640-41469702)
chr4 (256-320)||(25014054-25014118)
chr4 (256-320)||(26449221-26449285)
chr4 (256-317)||(8562509-8562570)
chr4 (231-320)||(42936924-42937013)
chr4 (28-103)||(23170356-23170431)
chr4 (257-320)||(23670919-23670982)
chr4 (232-320)||(41206721-41206808)
chr4 (269-320)||(51967765-51967816)
chr4 (256-318)||(9973445-9973507)
chr4 (268-320)||(24965806-24965858)
chr4 (231-318)||(53573644-53573731)
chr4 (256-318)||(23170119-23170181)
chr4 (231-320)||(4511360-4511449)
chr4 (284-318)||(12755059-12755093)
chr4 (28-65)||(9973155-9973192)
chr4 (231-264)||(29469832-29469865)
chr4 (256-320)||(22480350-22480414)
chr4 (284-320)||(32890627-32890663)
chr4 (284-320)||(46862259-46862295)
chr4 (256-311)||(29469844-29469899)
chr4 (231-320)||(21305718-21305808)
chr4 (231-264)||(9973433-9973466)
chr4 (284-320)||(17503228-17503264)
chr4 (268-320)||(29509376-29509428)
chr4 (268-320)||(50517828-50517880)
[»] chr7 (29 HSPs)
chr7 (231-320)||(21024644-21024733)
chr7 (231-318)||(35314107-35314194)
chr7 (231-317)||(38911051-38911137)
chr7 (231-320)||(4639221-4639310)
chr7 (28-96)||(21024451-21024519)
chr7 (231-319)||(37391892-37391980)
chr7 (28-103)||(14731907-14731982)
chr7 (28-103)||(38910859-38910934)
chr7 (231-320)||(37915400-37915489)
chr7 (28-103)||(34657008-34657083)
chr7 (233-320)||(34657206-34657293)
chr7 (28-98)||(19594603-19594673)
chr7 (243-318)||(14742184-14742259)
chr7 (231-320)||(5771485-5771574)
chr7 (28-97)||(37392296-37392365)
chr7 (231-318)||(6269138-6269224)
chr7 (256-320)||(1253845-1253908)
chr7 (237-320)||(43172792-43172875)
chr7 (232-277)||(14742121-14742166)
chr7 (268-320)||(42611252-42611304)
chr7 (256-293)||(14731740-14731777)
chr7 (284-320)||(23017734-23017770)
chr7 (28-96)||(36411534-36411602)
chr7 (29-66)||(35313939-35313976)
chr7 (243-277)||(14742145-14742179)
chr7 (243-277)||(14742171-14742205)
chr7 (231-264)||(1253887-1253920)
chr7 (231-264)||(14731756-14731789)
chr7 (260-308)||(31175239-31175287)
[»] chr3 (33 HSPs)
chr3 (235-320)||(9817994-9818079)
chr3 (231-320)||(47466820-47466909)
chr3 (231-320)||(27261949-27262039)
chr3 (231-320)||(49296783-49296872)
chr3 (28-100)||(47467042-47467114)
chr3 (231-320)||(8599625-8599714)
chr3 (28-98)||(9818205-9818275)
chr3 (256-320)||(53644753-53644817)
chr3 (32-103)||(37833210-37833281)
chr3 (28-103)||(40064659-40064734)
chr3 (28-103)||(45731065-45731140)
chr3 (231-320)||(7436859-7436948)
chr3 (256-320)||(45731341-45731405)
chr3 (28-103)||(53644946-53645021)
chr3 (28-97)||(49294114-49294183)
chr3 (256-320)||(37833410-37833474)
chr3 (231-320)||(33693979-33694068)
chr3 (231-308)||(32766628-32766705)
chr3 (256-317)||(40064863-40064920)
chr3 (258-305)||(49294320-49294367)
chr3 (231-320)||(49459078-49459167)
chr3 (268-318)||(22488419-22488469)
chr3 (284-320)||(25050315-25050351)
chr3 (268-320)||(43173628-43173680)
chr3 (231-318)||(30237902-30237989)
chr3 (238-287)||(29650865-29650914)
chr3 (284-320)||(7667483-7667519)
chr3 (232-320)||(25932116-25932204)
chr3 (256-320)||(27163071-27163135)
chr3 (256-320)||(53836639-53836703)
chr3 (270-320)||(9030427-9030477)
chr3 (268-320)||(24064030-24064082)
chr3 (231-263)||(53836627-53836659)
[»] chr5 (26 HSPs)
chr5 (231-318)||(25869367-25869454)
chr5 (231-320)||(32236890-32236979)
chr5 (28-103)||(2674709-2674784)
chr5 (231-318)||(28622512-28622599)
chr5 (28-103)||(34909978-34910053)
chr5 (256-320)||(33892264-33892328)
chr5 (28-103)||(33892463-33892538)
chr5 (28-97)||(19223362-19223431)
chr5 (28-93)||(25869175-25869240)
chr5 (231-320)||(37797461-37797550)
chr5 (28-103)||(32237119-32237194)
chr5 (256-320)||(34910203-34910267)
chr5 (231-318)||(16497276-16497363)
chr5 (256-317)||(31914091-31914152)
chr5 (260-320)||(21238205-21238265)
chr5 (256-317)||(2674514-2674575)
chr5 (256-320)||(7124230-7124294)
chr5 (256-320)||(19226272-19226336)
chr5 (234-317)||(36195673-36195756)
chr5 (258-320)||(35701948-35702010)
chr5 (256-320)||(5650131-5650195)
chr5 (28-103)||(21238399-21238468)
chr5 (268-320)||(29716217-29716269)
chr5 (258-316)||(36180222-36180280)
chr5 (231-264)||(5650174-5650207)
chr5 (284-320)||(29759363-29759399)
[»] chr1 (39 HSPs)
chr1 (231-320)||(7799110-7799199)
chr1 (231-320)||(33886294-33886383)
chr1 (231-320)||(33957869-33957958)
chr1 (231-320)||(30176941-30177030)
chr1 (28-103)||(7798899-7798974)
chr1 (28-103)||(33886501-33886576)
chr1 (28-103)||(33957676-33957751)
chr1 (231-320)||(4006037-4006126)
chr1 (231-320)||(5208615-5208704)
chr1 (231-320)||(41354110-41354199)
chr1 (28-103)||(30176751-30176826)
chr1 (28-103)||(34751187-34751262)
chr1 (231-320)||(9174560-9174649)
chr1 (231-320)||(18246884-18246973)
chr1 (231-320)||(51107872-51107961)
chr1 (256-320)||(34750993-34751057)
chr1 (256-320)||(8148044-8148108)
chr1 (256-320)||(11578456-11578520)
chr1 (256-320)||(34019694-34019758)
chr1 (253-320)||(3593969-3594036)
chr1 (31-98)||(34019525-34019592)
chr1 (231-320)||(50037955-50038043)
chr1 (256-320)||(1242639-1242703)
chr1 (231-320)||(49452361-49452450)
chr1 (28-103)||(1108763-1108839)
chr1 (269-320)||(1109014-1109065)
chr1 (256-318)||(42637479-42637541)
chr1 (268-320)||(25254275-25254327)
chr1 (268-320)||(27257572-27257624)
chr1 (269-320)||(26758317-26758368)
chr1 (231-318)||(32759382-32759469)
chr1 (256-317)||(49236324-49236385)
chr1 (268-320)||(47370884-47370936)
chr1 (256-317)||(43855122-43855183)
chr1 (273-320)||(46042594-46042641)
chr1 (284-317)||(3583311-3583344)
chr1 (284-317)||(42303712-42303745)
chr1 (231-263)||(43855110-43855142)
chr1 (232-264)||(49236364-49236396)
[»] chr2 (28 HSPs)
chr2 (231-320)||(13908660-13908749)
chr2 (28-103)||(13898871-13898946)
chr2 (28-103)||(14039488-14039563)
chr2 (232-318)||(18899248-18899334)
chr2 (28-103)||(33263257-33263332)
chr2 (28-103)||(41979221-41979296)
chr2 (28-103)||(45160805-45160880)
chr2 (256-317)||(38411938-38411999)
chr2 (28-96)||(38413102-38413170)
chr2 (257-320)||(33263482-33263545)
chr2 (28-97)||(3992180-3992249)
chr2 (28-97)||(12878054-12878123)
chr2 (256-318)||(45160613-45160675)
chr2 (231-320)||(18726919-18727008)
chr2 (256-320)||(41979428-41979492)
chr2 (231-317)||(35403917-35404003)
chr2 (247-316)||(28546406-28546475)
chr2 (268-318)||(32241803-32241853)
chr2 (284-317)||(40830382-40830415)
chr2 (262-301)||(3992247-3992286)
chr2 (284-318)||(34342994-34343028)
chr2 (268-317)||(9731685-9731734)
chr2 (231-264)||(13327677-13327710)
chr2 (231-320)||(30851408-30851497)
chr2 (284-320)||(3857862-3857898)
chr2 (284-320)||(12520329-12520365)
chr2 (268-320)||(31846481-31846533)
chr2 (256-320)||(32643924-32643988)
[»] scaffold0246 (4 HSPs)
scaffold0246 (28-103)||(1751-1826)
scaffold0246 (256-320)||(25004-25068)
scaffold0246 (28-103)||(25248-25323)
scaffold0246 (267-320)||(1970-2023)
[»] chr6 (12 HSPs)
chr6 (231-318)||(31995655-31995742)
chr6 (231-320)||(6789050-6789139)
chr6 (231-320)||(1462730-1462819)
chr6 (231-320)||(10110660-10110749)
chr6 (35-103)||(31995864-31995932)
chr6 (28-103)||(21199963-21200038)
chr6 (28-103)||(8779221-8779296)
chr6 (256-318)||(7834997-7835059)
chr6 (232-318)||(3000947-3001033)
chr6 (268-320)||(16439426-16439478)
chr6 (255-318)||(21009967-21010030)
chr6 (285-320)||(31975068-31975103)
[»] scaffold0002 (1 HSPs)
scaffold0002 (231-320)||(16139-16228)
[»] chr8 (20 HSPs)
chr8 (231-320)||(19484882-19484971)
chr8 (28-103)||(41252544-41252619)
chr8 (231-320)||(6387202-6387291)
chr8 (231-320)||(26619929-26620017)
chr8 (28-70)||(28316746-28316788)
chr8 (231-320)||(27869075-27869164)
chr8 (284-320)||(3007133-3007169)
chr8 (284-320)||(41394614-41394650)
chr8 (269-320)||(33177216-33177267)
chr8 (256-318)||(4870482-4870544)
chr8 (268-318)||(24082922-24082972)
chr8 (258-320)||(41252744-41252806)
chr8 (233-318)||(7761225-7761310)
chr8 (231-320)||(27974267-27974356)
chr8 (231-320)||(28031536-28031625)
chr8 (268-320)||(8029168-8029220)
chr8 (284-320)||(12737397-12737433)
chr8 (271-320)||(18985068-18985117)
chr8 (284-320)||(42423956-42423992)
chr8 (284-320)||(44977492-44977528)
[»] scaffold0421 (1 HSPs)
scaffold0421 (28-103)||(2092-2167)
[»] scaffold0118 (1 HSPs)
scaffold0118 (231-320)||(38504-38593)
[»] scaffold0012 (1 HSPs)
scaffold0012 (237-317)||(174517-174597)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 54561810 - 54561899
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54561810 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 54561899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 29965926 - 29965839
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29965926 ggtaaactcgtactagtttacgagtcgagattacgatttgagtttacatagctaaaacgagttgaggtaaactttcgagttgtaaaac 29965839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 51967572 - 51967647
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51967572 tatttaaatgagaaaatggaacaattgaagttaaagttacaactaaagatgaaaaagagtttaaatgtactaataa 51967647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 56423675 - 56423600
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56423675 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 56423600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 6487037 - 6486962
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6487037 tatttaaatgagaaaatagaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 6486962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 54561613 - 54561688
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  54561613 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaatagagtttaaatgtactgataa 54561688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 8084860 - 8084949
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||||    
T  8084860 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaaataaaacgagttgaggtaaactctcgagttgcaaaacct 8084949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 40163339 - 40163403
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40163339 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 40163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 40487129 - 40487065
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40487129 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 40487065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 56423482 - 56423418
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56423482 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 56423418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 41470036 - 41469961
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41470036 tatttaaatgagaaaattaaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 41469961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 6486823 - 6486759
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6486823 cgagtttatgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 6486759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 25013849 - 25013924
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25013849 tatttaaataagaaaataaaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 25013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 26449011 - 26449086
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  26449011 tatttaaatgagaaaatagaacaattgaagttaaagttacaaccgaagatgaaagagagtttaaatgtactcataa 26449086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 29966119 - 29966044
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  29966119 tatttaaatgagaaaatggagcaattgaagttaaagttacaactgaaggtgaaatagagtttaaatgtactgataa 29966044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 40163164 - 40163239
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  40163164 tattgaaatgagaaaatggaataattgaagttaaagttacaactgaagatgaaacagagtttaaatgtactgataa 40163239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 40487384 - 40487309
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  40487384 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatttaacagagtttaaatgtactgataa 40487309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 872203 - 872289
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||| |||  |||||||||||||||||||||| |||||||||||    
T  872203 ggtaaactcgtacgagttctcgagtcgagtttacgagtcgagtttacctagacaaaacgagttgaggtaaactcttgagttgtaaaa 872289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 8563073 - 8563003
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagtt-aaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  8563073 tatttaaatgagaaaatggaacaattgaagttaaaagttacaactgaagatgaaacagagtttaaatgtac 8563003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 41469702 - 41469640
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41469702 cgagtttacgagtcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 41469640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25014054 - 25014118
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25014054 cgagtttacaattcaagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 25014118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 26449221 - 26449285
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26449221 cgagtttacgattcaagtttacatagctaaaacgagttgaggtaaactatcgagttgtaaaacct 26449285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 8562570 - 8562509
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  8562570 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgaattggaaaa 8562509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 42937013 - 42936924
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||  ||  |||||||| ||||||||||||||||||||| |||||||    
T  42937013 ggtagactcgtacgagtttacgattcgagtttacgagtcgagtttatctaagtaaaacgaattgaggtaaactctcgagttgcaaaacct 42936924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 23170431 - 23170356
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||| | || ||||||||||||| ||||    
T  23170431 tatttaaatgagaaaatggaacaattgaagttaaaaatacaactgaagatgatacagtgtttaaatgtactgataa 23170356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 23670982 - 23670919
Alignment:
Q  257 gagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  23670982 gagtttacgagtcgagtttatataggtaaaatgagttgaggtaaactctcgagttgtaaaacct 23670919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 41206808 - 41206721
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||  ||||||| |||| ||| | || ||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  41206808 gtaaactcgtacgagttatcgagtcg-gttttcgagttgattttacctaggtaaaacgagttgaggtaaactcttgagttgtaaaacct 41206721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 51967765 - 51967816
Alignment:
Q  269 cgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  51967765 cgagtttacgtagctaaaacgagttgaggtaaactctcgagttataaaacct 51967816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 9973445 - 9973507
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||| || |||||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  9973445 cgagtttatgagtcgagtttacatagctaaaatgagttgaggtaaaatcttgagttgtaaaac 9973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 24965858 - 24965806
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  24965858 tcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 24965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 53573731 - 53573644
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||||    |||||||||||||| ||||||||    |  ||||| ||||||||||||||||||||||||||||||    
T  53573731 ggtaaactcgtacgagttcttaagtcgagtttacgagtcgagtttgtccaagtaaaatgagttgaggtaaactctcgagttgtaaaac 53573644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 23170181 - 23170119
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||| |||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||    
T  23170181 cgagtttccgattcgagtttacttatgtaaaacgagttgagataaactcttgagttgtaaaac 23170119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 4511449 - 4511360
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||| ||  | || ||||||||||| || | ||||| |||  |||| |||||||||||||||||||||||| |||||||    
T  4511449 ggtaaactcgtacgatttctcaagacgagtttacgactcaaatttacctagtcaaaaagagttgaggtaaactctcgagttgcaaaacct 4511360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 12755059 - 12755093
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||||||||||||||||||    
T  12755059 aaaacgagttgaggtaaactctcgagttgtaaaac 12755093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 9973155 - 9973192
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagtt 65  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9973155 tatttaaatgagaaaatggaacaattgaagttagagtt 9973192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 29469832 - 29469865
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    ||||||||||||||||||||||||||||||||||    
T  29469832 ggtaaactcgtacgagtttacgagtcgagtttac 29469865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 22480350 - 22480414
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| |||| ||||| ||| |||   ||||||| ||||||||||||||||||||||||    
T  22480350 cgagtttacgagtcgaatttacttaggtaattagagttgaagtaaactctcgagttgtaaaacct 22480414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 32890627 - 32890663
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32890627 aaaacgagttgaggtaaactctcgagttgcaaaacct 32890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 46862295 - 46862259
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46862295 aaaacgagttgaggtaaactctcgagttgcaaaacct 46862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 29469844 - 29469899
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagtt 311  Q
    ||||||||||| |||||||||| ||  |||||||||| || |||||||||||||||    
T  29469844 cgagtttacgagtcgagtttacctaaataaaacgagtcgaagtaaactctcgagtt 29469899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 21305808 - 21305718
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacga-ttcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||||||||| ||||||||||||| | ||  | ||||||||  ||||||||||||| |||||| || || | |||||||||    
T  21305808 ggtaaactcatacgagtttatgagtcgagtttacaatttaaaatttacataagtaaaacgagttgaagtaaacccttgaatcgtaaaacct 21305718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 9973433 - 9973466
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    |||||||||||||||||||| |||||||||||||    
T  9973433 ggtaaactcgtacgagtttatgagtcgagtttac 9973466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 17503264 - 17503228
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||| |||||||||||||||||| |||||||||||||    
T  17503264 aaaatgagttgaggtaaactctcaagttgtaaaacct 17503228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 29509428 - 29509376
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  ||||  ||||||||||||||||||||||| |||||||    
T  29509428 tcgagtttacctagacaaaattagttgaggtaaactctcgagttgcaaaacct 29509376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 50517828 - 50517880
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  |||| ||||||||||||||| |||||||| |||||||    
T  50517828 tcgagtttacctaggcaaaatgagttgaggtaaactttcgagttgcaaaacct 50517880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 21024644 - 21024733
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21024644 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaactagttgaggtaaactctcgagttgtaaaacct 21024733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 35314107 - 35314194
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35314107 ggtaaactcatacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcaagttgtaaaac 35314194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 38911051 - 38911137
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  38911051 ggtaaactcgtacgagtttacgagtcgagtttatgattcgagtttacataactaaaatgagtttaggtaaactctcgagttgtaaaa 38911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 4639310 - 4639221
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  4639310 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctagttaaaacgagttgaggtaaactctcgagttgcaaaacct 4639221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 21024451 - 21024519
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgta 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21024451 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgta 21024519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 37391980 - 37391892
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacc 319  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  37391980 ggtaaactcgtacgagtttataagtcgagtttacgattcgagtttacataaataaaatgagttgaggtaaactctcgagttgtaaaacc 37391892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 14731982 - 14731907
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14731982 tatttaaatgagaaaatgaaacaattgaagttaaagttacaactgaatatgaaaaagagtttaaatgtactgataa 14731907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 38910859 - 38910934
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  38910859 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatggaacagagtttaaatgtactgataa 38910934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 37915489 - 37915400
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||| |||||||||||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  37915489 ggtaaattcgtacgagtttacgattcaagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 37915400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 34657008 - 34657083
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||    
T  34657008 tatttaaatgagaaaatggaacaattgaagttaaagttacaactcaagatgaaacatagtttaaatgtactgataa 34657083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 34657206 - 34657293
Alignment:
Q  233 taaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||| |||||||    
T  34657206 taaattcgtacgaatttacgagtcgagtttacgattcgagtttacatagctaaaatgagttgagataaactctcaaattgcaaaacct 34657293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 19594603 - 19594673
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtact 98  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  19594603 tatttaaataagaaaatggaacaattgaagttaaagttacaattgaagatgaaacagagtttaaatgtact 19594673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 14742184 - 14742259
Alignment:
Q  243 cgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||| |||||    
T  14742184 cgagtttacgagtcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactcttgagttgcaaaac 14742259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 5771574 - 5771485
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||| ||| |||||||||||||||| || ||||||| |||  |||||||||||||||||| ||| |||||| |||||||    
T  5771574 ggtaaactcgtacgaattttcgagtcgagtttacgagtcaagtttacctaggcaaaacgagttgaggtaaattcttgagttgcaaaacct 5771485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 37392365 - 37392296
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  37392365 tatttaaatgagaaaatataacaattgatgttaaagttacaattgaagatgaaacagagtttaaatgtac 37392296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 6269138 - 6269224
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||||||| |||| |||||| |||| |||||||||||  |||||| |||||||  ||||||||||||||||||||    
T  6269138 ggtaaactcgtacgagtttacaagtcaagtttatgatttgagtttacata-ataaaacaagttgagaaaaactctcgagttgtaaaac 6269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 1253908 - 1253845
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||    
T  1253908 cgagtttacgattcgagtttacaaaggtaaaacgagttgaggtaaactcttgag-tgtaaaacct 1253845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 43172792 - 43172875
Alignment:
Q  237 ctcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||  ||| || ||||||||  |||||||||| |||  |||| ||||||||||||||||||||||||||||||||    
T  43172792 ctcgtacgagttctcgactcaagtttacgggtcgagtttacctaggcaaaatgagttgaggtaaactctcgagttgtaaaacct 43172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 14742121 - 14742166
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttacgattcgagtttac 277  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  14742121 gtaaactcgtacgagtttacgattcgagtttacgattcgagtttac 14742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 42611252 - 42611304
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  42611252 tcgagtttacctaggcaaaacgagttgaggtaaactctcgagttgtaaaacct 42611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 14731777 - 14731740
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagtt 293  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14731777 cgagtttacgattcgagtttacatagctaaaacgagtt 14731740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 23017734 - 23017770
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||    
T  23017734 aaaacgagttgaggtaaactctcgagttgtaaaacct 23017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 36411602 - 36411534
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgta 96  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||| |||  || | ||||||||||||    
T  36411602 tatttaaatgagaaaatggaacaattgaagttagagttagaaatgaggattgaacaaagtttaaatgta 36411534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 35313939 - 35313976
Alignment:
Q  29 atttaaatgagaaaatggaacaattgaagttaaagtta 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  35313939 atttcaatgagaaaatggaacaattgaagttaaagtta 35313976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 14742145 - 14742179
Alignment:
Q  243 cgagtttacgagtcgagtttacgattcgagtttac 277  Q
    ||||||||||| |||||||||||||||||||||||    
T  14742145 cgagtttacgattcgagtttacgattcgagtttac 14742179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 14742171 - 14742205
Alignment:
Q  243 cgagtttacgagtcgagtttacgattcgagtttac 277  Q
    |||||||||||||||||||||||| ||||||||||    
T  14742171 cgagtttacgagtcgagtttacgagtcgagtttac 14742205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 1253920 - 1253887
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    ||||||||||||||||||||||| ||||||||||    
T  1253920 ggtaaactcgtacgagtttacgattcgagtttac 1253887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 14731789 - 14731756
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    ||||||||||||||||||||||| ||||||||||    
T  14731789 ggtaaactcgtacgagtttacgattcgagtttac 14731756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 31175239 - 31175287
Alignment:
Q  260 tttacgattcgagtttacatagctaaaacgagttgaggtaaactctcga 308  Q
    ||||||| |||| ||||| ||  ||||||||||||||||||||||||||    
T  31175239 tttacgaatcgattttacctaaataaaacgagttgaggtaaactctcga 31175287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 9818079 - 9817994
Alignment:
Q  235 aactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818079 aactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 9817994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 47466909 - 47466820
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47466909 ggtaaactcgtacgagtttacaagtcgagtttacgattcgagtttacatagctaaaacgagttgagataaactctcgagttgtaaaacct 47466820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 27261949 - 27262039
Alignment:
Q  231 ggtaaactcgtacgagtttac-gagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27261949 ggtaaactcgtacgagtttactgagtcgagtttacgattcaagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 27262039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 49296783 - 49296872
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  49296783 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 49296872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 47467114 - 47467042
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47467114 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagaatttaaatgtactaa 47467042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 8599625 - 8599714
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  8599625 ggtaaactcgtgcgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 8599714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 9818275 - 9818205
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtact 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9818275 tatttaaatgagaaaatgaaacaattgaagttaaagttacaactgaatatgaaaaagagtttaaatgtact 9818205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 53644817 - 53644753
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53644817 cgagtttacgattcgaatttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 53644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 37833210 - 37833281
Alignment:
Q  32 taaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  37833210 taaatgagaaaatggaacaattgaagttaaagttacaacttaagatgaaacagagtttaaatgtactgataa 37833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 40064659 - 40064734
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||    
T  40064659 tatttaaatgagaaaatggaacaattgaagttaaaattacaactgaagatgaagcagagtttaaatgtactgataa 40064734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 45731065 - 45731140
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||    
T  45731065 tatttaaatgagaaaatggaacaattgaagttaaagttacaactaaagatcaaacagagtttaaatgtactgataa 45731140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 7436948 - 7436859
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||| ||   ||||||||||||||||||||||||||||| |||||||    
T  7436948 ggtaaactcgtacgagttctcgagtcgagtttacgagtcgagtttacctaagcaaaacgagttgaggtaaactctcgagttgcaaaacct 7436859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 45731341 - 45731405
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45731341 cgagtttacaattcgagtttacatagctaaaacgagttgaggtaaactctcgagttataaaacct 45731405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 53645021 - 53644946
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||    
T  53645021 tatttaaatgataaaatggaacaattgaagttaaagttacagttgaagatgaaacagagtttaaatgtactgataa 53644946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 49294114 - 49294183
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  49294114 tatttaaatgagaaaattgaacaattaaagttaaagttacaactgaagatgaaacaaagtttaaatgtac 49294183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 37833410 - 37833474
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  37833410 cgagtttacgattcgagtttacatagttaaaacgagttgaggtaaactctcgagctataaaacct 37833474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 33693979 - 33694068
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttaca-tagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||  ||||| |||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||| |||||||    
T  33693979 ggtaaactcgtacgagttctcgagttgagtttacgagtcgagtttacattagc-aaaacgagttaaggtaaactctcgagttgcaaaacct 33694068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 32766628 - 32766705
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcga 308  Q
    ||||||||||||||||||  | |||||||||||||| |||||| |||||||  ||||||| |||||||||||||||||    
T  32766628 ggtaaactcgtacgagttctcaagtcgagtttacgagtcgagtatacatagacaaaacgaattgaggtaaactctcga 32766705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 40064863 - 40064920
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  40064863 cgagtttacgattcgagtttac----ctaaaacgagttgaggtaaactctcgagttgtaaaa 40064920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 49294320 - 49294367
Alignment:
Q  258 agtttacgattcgagtttacatagctaaaacgagttgaggtaaactct 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49294320 agtttacgattcgagtttacataactaaaacgagttgaggtaaactct 49294367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 49459078 - 49459167
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||| ||  |||||| ||||||||| || | ||||| |||   |||||||||||||||||||||||||||| |||||||    
T  49459078 ggtaaactcgtacgaattctcgagtcaagtttacgagtcaaatttacctagacgaaacgagttgaggtaaactctcgagttgcaaaacct 49459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 22488469 - 22488419
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  22488469 tcgagtttaactaggtaaaacgagttgaggtaaactctcgagttgtaaaac 22488419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 25050315 - 25050351
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||    
T  25050315 aaaacgagttgaggtaaactctcgagttgtaaaacct 25050351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 43173628 - 43173680
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| ||  |||||||||||||||||||||||||||||| |||||||    
T  43173628 tcgagtttacctaaataaaacgagttgaggtaaactctcgagttgcaaaacct 43173680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 30237989 - 30237902
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||| | ||||| |||||||||||   ||||| ||||||||| |||||| ||||||| | ||||||||| | |||||||    
T  30237989 ggtaaactcgtacaaatttacaagtcgagtttatagttcgaatttacataggtaaaacaagttgagctgaactctcgaatcgtaaaac 30237902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 29650865 - 29650914
Alignment:
Q  238 tcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaa 287  Q
    |||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  29650865 tcgtacgagtttacaaatcgagtttacaattcgagtttacatagataaaa 29650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 7667483 - 7667519
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7667483 aaaacgagttgaggtaaactctcaagttgtaaaacct 7667519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 25932116 - 25932204
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||  ||| | ||  |||| | ||||||||||  ||  |||||||||||| |||||||||| |||||||||||||    
T  25932116 gtaaactcgtacgagttctcgatttgaaattacaagtcgagtttacccagacaaaacgagttgaagtaaactctcaagttgtaaaacct 25932204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 27163071 - 27163135
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| |||| ||||||||  || ||| |||||||| |||||||| |||||||||||||    
T  27163071 cgagtttacgagtcgaatttacataaatataacaagttgaggcaaactctcaagttgtaaaacct 27163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 53836639 - 53836703
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||| ||| |||||||||  ||| |||||||||| ||||||||||||| ||||| |||||||    
T  53836639 cgagttttcgagtcgagtttatctagataaaacgagtcgaggtaaactctcaagttgcaaaacct 53836703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 9030477 - 9030427
Alignment:
Q  270 gagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||| |||| |||||| | ||||||||||||||||| |||||||||||    
T  9030477 gagtttatataggtaaaacaaattgaggtaaactctcgaattgtaaaacct 9030427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 24064030 - 24064082
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  ||||||||||||||||||||||  |||||| ||||||    
T  24064030 tcgagtttacctaggcaaaacgagttgaggtaaactcttaagttgttaaacct 24064082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 53836627 - 53836659
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagttta 263  Q
    ||||||||||||||||||| |||||||||||||    
T  53836627 ggtaaactcgtacgagttttcgagtcgagttta 53836659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 25869367 - 25869454
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25869367 ggtaaactcgtacgaatttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 25869454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 32236979 - 32236890
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  32236979 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagttaaaacgagttgaggtaaactctcgaggtgtaaaacct 32236890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 2674784 - 2674709
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2674784 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 2674709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 28622599 - 28622512
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28622599 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctagctaaaacgagttgaggtaaactctcgagttgcaaaac 28622512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 34909978 - 34910053
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34909978 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 34910053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 33892328 - 33892264
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33892328 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 33892264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 33892538 - 33892463
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33892538 tatttaaatgagaaaattaaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 33892463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 19223362 - 19223431
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19223362 tatttaaatgagaaaatgaaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatgtac 19223431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 25869175 - 25869240
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaat 93  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25869175 tatttaaatgagaaaatagaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaat 25869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 37797550 - 37797461
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||| || |||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||| |||||||    
T  37797550 ggtaaactcgtacgagtttatgattcgagtttacgagtcgagtttatctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 37797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 32237194 - 32237119
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  32237194 tatttaaatgagaaaatggaacaattgaagttaaagttacaattgaagatgaaacaaagtttaaatgtactgataa 32237119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 34910203 - 34910267
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  34910203 cgagtttacgattcgagtttacataactaaaacgagttgaggtaaactctcgaattgtaaaacct 34910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 16497363 - 16497276
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||||  ||||||| ||||||||||||    
T  16497363 ggtaaactcgtacgagtttatgagtcgagtttacgattttagtttacttagataaaacgagttgagacaaactcttgagttgtaaaac 16497276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 31914091 - 31914152
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31914091 cgagtttatgattcgagtttacataggtaaaacgagttgaggtaaactctcgagttgtaaaa 31914152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 21238265 - 21238205
Alignment:
Q  260 tttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21238265 tttacgattcaagtttacatagttaaaacgagttgaggtaaactctcgagttgtaaaacct 21238205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 2674575 - 2674514
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  2674575 cgagtttacgattcgaatttatatagctaaaacgagttgaggtaaactctcgaattgtaaaa 2674514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 7124294 - 7124230
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |||||||    
T  7124294 cgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaactttcgagttgcaaaacct 7124230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 19226272 - 19226336
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||  | |||||||||||    
T  19226272 cgagtttacaattcgaatttacatagctaaaacgagttgaggtaaactcttaaattgtaaaacct 19226336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 36195756 - 36195673
Alignment:
Q  234 aaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||| ||| || ||||| |||||||||||||||||||||||| |||  |||||| |||||||||||||| ||||||| |||||    
T  36195756 aaacttgtatgaatttacaagtcgagtttacgattcgagtttatatacgtaaaacaagttgaggtaaactttcgagttataaaa 36195673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 35701948 - 35702010
Alignment:
Q  258 agtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| | |||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  35701948 agtttacgagttgagtttacctaagtaaaacgagttgaggtaaactctcgagttgtaaaacct 35702010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 5650195 - 5650131
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||| || |||||||||| ||| ||||||||||||||||||||||| |||| |||||||||    
T  5650195 cgagtttatgagtcgagtttacctaggtaaaacgagttgaggtaaactcttgagtagtaaaacct 5650131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 21238468 - 21238399
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||| |||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| ||||    
T  21238468 tatttatatgagaaaatggaacaattgaaatta------caactaaagatgaaaaagagtttaaatgtactgataa 21238399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 29716269 - 29716217
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  29716269 tcgagtttacctaggcaaaacgagttgaggtaaactctcgagttgcaaaacct 29716217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 36180222 - 36180280
Alignment:
Q  258 agtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaa 316  Q
    ||||||||| | |||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  36180222 agtttacgagttgagtttacctaagtaaaatgagttgaggtaaactctcgagttgtaaa 36180280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 5650207 - 5650174
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    |||||||||||||||||||| |||||||||||||    
T  5650207 ggtaaactcgtacgagtttatgagtcgagtttac 5650174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 29759363 - 29759399
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  29759363 aaaatgagttgaggtaaactatcgagttgtaaaacct 29759399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 7799110 - 7799199
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7799110 ggtaaactcgtacaagtttacgagtcgagtttacgattcgagtttatatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 7799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 33886383 - 33886294
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33886383 ggtaaactcgtacgagtttacaagtcgaatttacgattcgagtttacatagctaaaacgagttgagataaactctcgagttgtaaaacct 33886294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 33957869 - 33957958
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33957869 ggtaaactcgtacgagtttacaagtcgaatttacgattcgagtttacatagctaaaacgagttgagataaactctcgagttgtaaaacct 33957958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 30176941 - 30177030
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  30176941 ggtaaactcgtacgagtttataagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaattctcgaattgtaaaacct 30177030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 7798899 - 7798974
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7798899 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactcataa 7798974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 33886576 - 33886501
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33886576 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 33886501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 33957676 - 33957751
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33957676 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 33957751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 4006037 - 4006126
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  4006037 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 4006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 5208704 - 5208615
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  5208704 ggtaaactcgtacgagtttacgattcgagtttaccagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgtaaaacct 5208615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 41354110 - 41354199
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  41354110 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 41354199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 30176751 - 30176826
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  30176751 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatgtactgataa 30176826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 34751262 - 34751187
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  34751262 tatttaaatgagaaaattgaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatttacttataa 34751187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 9174560 - 9174649
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| |||||||| || |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  9174560 ggtaaactcgtgcgagtttatgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 9174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 18246973 - 18246884
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||| |||| ||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  18246973 ggtaaattcgtgcgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 18246884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 51107872 - 51107961
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||| |||| ||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  51107872 ggtaaattcgtgcgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 51107961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 34751057 - 34750993
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34751057 cgagtttacgattcgagtttacattgctaaaacgagttgaggtaaactctcgagttgtaaaacct 34750993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 8148044 - 8148108
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  8148044 cgagtttacgattcgagtttacctagctaaaacgagttgaggtaaactctcgagttgcaaaacct 8148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 11578520 - 11578456
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  11578520 cgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 11578456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 34019694 - 34019758
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34019694 cgagtttacgattcaagtttacatagctaaaataagttgaggtaaactctcgagttgtaaaacct 34019758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 3593969 - 3594036
Alignment:
Q  253 agtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||| ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  3593969 agtcaagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgtaaaacct 3594036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 34019525 - 34019592
Alignment:
Q  31 ttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtact 98  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||    
T  34019525 ttaaatgagaaaatggaacaagtgaagtgaaagttacgactgaagatgaaacagagtttaaatgtact 34019592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 50038043 - 50037955
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||| ||| ||||||||||||  ||||||||||||||| |||||||| ||||||||| | ||||||||||||||| ||||||||||    
T  50038043 ggtaaacttgtaagagtttacgagta-agtttacgattcgagcttacataggtaaaacgagataaggtaaactctcgagctgtaaaacct 50037955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 1242703 - 1242639
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||    
T  1242703 cgagtttacgattcgagtttatctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 1242639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 49452450 - 49452361
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||  |||||||||||||| | |||| ||||| |||   |||||||||||| ||||||||||||||| |||||||    
T  49452450 ggtaaactcgtacgagttctcgagtcgagtttacaagtcgaatttacctagacgaaacgagttgagataaactctcgagttgcaaaacct 49452361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 1108763 - 1108839
Alignment:
Q  28 tatttaaatgagaaaa-tggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  1108763 tatttaaatgaaaaaaatggaataattgaagttaaagttacagctgaagatgaaacacagtttaaatgtactgataa 1108839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 1109014 - 1109065
Alignment:
Q  269 cgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  1109014 cgagtttacatagctaaaacgagttgagataaactctcgaattgtaaaacct 1109065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 42637541 - 42637479
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||||    
T  42637541 cgagtttacaattcgagtttacataggtataacgagttgagataaactcttgagttgtaaaac 42637479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 25254275 - 25254327
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  25254275 tcgagtttacctaggtaaaacgagttgaagtaaactctcgagttgtaaaacct 25254327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 27257624 - 27257572
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  27257624 tcgagtttacttggataaaacgagttgaggtaaactctcgagttgtaaaacct 27257572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 26758317 - 26758368
Alignment:
Q  269 cgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  26758317 cgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 26758368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 32759469 - 32759382
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||| |||||||| ||  |||||||||| ||||| |||| ||||| |||  |||||||||||||||||| ||||||||| ||||||    
T  32759469 ggtaaattcgtacgaattctcgagtcgagtgtacgagtcgaatttacttagacaaaacgagttgaggtaaattctcgagttataaaac 32759382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 49236385 - 49236324
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||| ||| |||||||||| |||  |||||||||||||||||||||| |||||||||||    
T  49236385 cgagttttcgagtcgagtttacctaggcaaaacgagttgaggtaaactcttgagttgtaaaa 49236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 47370936 - 47370884
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  47370936 tcgagtttacctaggcaaaacgagttgaggtaaactctcgagttgcaaaacct 47370884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 43855122 - 43855183
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||| || |||||||||   || ||||||||||||| |||||||||||||||||||||    
T  43855122 cgagtttatgagtcgagtttaataaggtaaaacgagttgacgtaaactctcgagttgtaaaa 43855183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 46042594 - 46042641
Alignment:
Q  273 tttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||||||||    
T  46042594 tttacataggtaaaacgaattgaggtaaaccctcgaattgtaaaacct 46042641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 3583344 - 3583311
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||| |||||||||||||||||||||||||||||    
T  3583344 aaaatgagttgaggtaaactctcgagttgtaaaa 3583311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 42303745 - 42303712
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||||||||||||||||| |||||||||||    
T  42303745 aaaacgagttgaggtaaactcttgagttgtaaaa 42303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 43855110 - 43855142
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagttta 263  Q
    |||||||||||||||||||| ||||||||||||    
T  43855110 ggtaaactcgtacgagtttatgagtcgagttta 43855142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 49236396 - 49236364
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttac 264  Q
    |||||||||||||||||| ||||||||||||||    
T  49236396 gtaaactcgtacgagttttcgagtcgagtttac 49236364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 13908660 - 13908749
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  13908660 ggtaaactcgtacgaatttacgagtcgagtttacgattcgagtttacataattaaaacgagttgaggtaaactctcgaattgtaaaacct 13908749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 13898871 - 13898946
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13898871 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 13898946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 14039488 - 14039563
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14039488 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 14039563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 18899334 - 18899248
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  18899334 gtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaac 18899248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 33263257 - 33263332
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  33263257 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatatactgataa 33263332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 41979221 - 41979296
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41979221 tatttaaatgagaaaattgaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatgtactgataa 41979296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 45160880 - 45160805
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  45160880 tatttaaatgagaaaatggaacaattgaagttaaagttataactgaagatgaaacagagtttaaatgtactgataa 45160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 38411999 - 38411938
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38411999 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 38411938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 38413170 - 38413102
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgta 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38413170 tatttaaatgaaaaaatggaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatgta 38413102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 33263482 - 33263545
Alignment:
Q  257 gagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33263482 gagtttacgattcgagtttacatagctaaaacaagttgaggtaaactctcgagttgtaaaacct 33263545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 3992180 - 3992249
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  3992180 tatttaaatgagaaaatggaataattgaagttaaagttacaactgaagatgaaacagagtttgaatgtac 3992249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 12878054 - 12878123
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtac 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  12878054 tatttaaatgagaaaattgaacaattgaagttaaagttacaactgaagatgaaacaaagtttaaatgtac 12878123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 45160675 - 45160613
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  45160675 cgagtttacgattcgagtttacatagctaaaatgagttgaggtaaattctcgagttgtaaaac 45160613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 18727008 - 18726919
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||| ||   ||||||||||||||||||||||| ||||| |||||||    
T  18727008 ggtaaactcgtacgagttctcgagtcgagtttacgaatcgagtttacctaagcaaaacgagttgaggtaaactctcaagttgcaaaacct 18726919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 41979428 - 41979492
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||| ||||||| |||| |||| |||||||||||||||||||||||| |||||||||||||    
T  41979428 cgagtttatgattcgaatttatatagttaaaacgagttgaggtaaactctcaagttgtaaaacct 41979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 35404003 - 35403917
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||||| |||||||  |||||| | ||||||| |||||||||| ||  |||||||||||||||||||||||| ||||| ||||    
T  35404003 ggtaaactcgcacgagttctcgagtcaaatttacgagtcgagtttacctatgtaaaacgagttgaggtaaactctcaagttgcaaaa 35403917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 28546406 - 28546475
Alignment:
Q  247 tttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaa 316  Q
    ||||||||||||||||||||||| | ||||||||| ||||| || ||| |||||||| |||| |||||||    
T  28546406 tttacgagtcgagtttacgattcaaatttacatagataaaatgatttgcggtaaactttcgaattgtaaa 28546475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 32241853 - 32241803
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||| ||| |||||||||||||||||||||||| || ||||||||    
T  32241853 tcgagtttacctaggtaaaacgagttgaggtaaactctcaagatgtaaaac 32241803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 40830382 - 40830415
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    ||||||||||||||||||||||||||||||||||    
T  40830382 aaaacgagttgaggtaaactctcgagttgtaaaa 40830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 3992247 - 3992286
Alignment:
Q  262 tacgattcgagtttacatagctaaaacgagttgaggtaaa 301  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  3992247 tacgattcaagtttacataactaaaacgagttgaggtaaa 3992286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 34342994 - 34343028
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||||||||||||| |||||||    
T  34342994 aaaacgagttgaggtaaactctcgagtcgtaaaac 34343028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 9731685 - 9731734
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||||||| |||  ||||| |||| |||||||||||||||||||||||    
T  9731685 tcgagtttacctaggcaaaacaagttaaggtaaactctcgagttgtaaaa 9731734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 13327710 - 13327677
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttac 264  Q
    ||||||||||||||||||||||||||||| ||||    
T  13327710 ggtaaactcgtacgagtttacgagtcgagattac 13327677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 30851408 - 30851497
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| ||||||||  |||||||| ||||| | | |||||||| ||   |||| ||||||||||||| |||||| ||| |||||||    
T  30851408 ggtaaactcatacgagttctcgagtcgactttaccagtagagtttacctaagcaaaaagagttgaggtaaattctcgaattgcaaaacct 30851497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 3857898 - 3857862
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||  |||||||||||||    
T  3857898 aaaacgagttgaggtaaactcttaagttgtaaaacct 3857862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 12520329 - 12520365
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  12520329 aaaacgagttgaggtaaactctcaagttgcaaaacct 12520365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 31846533 - 31846481
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  |||| |||||||| ||||||||||||||| |||||||    
T  31846533 tcgagtttacctaggcaaaatgagttgagataaactctcgagttgcaaaacct 31846481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 32643924 - 32643988
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| | || ||||||| ||| |||||  |||||||||||||| |||||||| |||||||    
T  32643924 cgagtttacaactcaagtttacctaggtaaaagaagttgaggtaaactttcgagttgaaaaacct 32643988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 1751 - 1826
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1751 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 1826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 25068 - 25004
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25068 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 25004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 25323 - 25248
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  25323 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatttaacagagtttaaatgtactgataa 25248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 1970 - 2023
Alignment:
Q  267 ttcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1970 ttcgagtttacatagctaaaacgagttgaggtaaactcccgagttgtaaaacct 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 31995742 - 31995655
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  31995742 ggtaaactcgtacgagtttacgagtcgagtttacaatttaagtttacatagctaaaacgagttgtggtaaactctcgagttgtaaaac 31995655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 6789050 - 6789139
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  6789050 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 6789139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 1462819 - 1462730
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  1462819 ggtaaactcgtactagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 1462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 10110749 - 10110660
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  10110749 ggtaaactcgtgcgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 10110660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 31995932 - 31995864
Alignment:
Q  35 atgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31995932 atgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactgataa 31995864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 21199963 - 21200038
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  21199963 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaagcagagtttaaatgtacaaataa 21200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 8779296 - 8779221
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||    
T  8779296 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgatacagtgtttaaatgtactgataa 8779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 7835059 - 7834997
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7835059 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcaagttgtaaaac 7834997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 3000947 - 3001033
Alignment:
Q  232 gtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||| |||  |||| |||| |||||||||||| |||| ||| | ||| ||||||||||||||||||||||||||||||||||||    
T  3000947 gtaaacttgtaaaagttcacgattcgagtttacgagtcgaattttcctagataaaacgagttgaggtaaactctcgagttgtaaaac 3001033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 16439426 - 16439478
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  16439426 tcgagtttacctagacaaaacgagttgaggtaaactctcgagttgaaaaacct 16439478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 21010030 - 21009967
Alignment:
Q  255 tcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||| |||| || ||||||||  |||||||||||||||||||||||  |||||||||||    
T  21010030 tcgagtttaagatttgaatttacataagtaaaacgagttgaggtaaactcttaagttgtaaaac 21009967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 31975103 - 31975068
Alignment:
Q  285 aaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||| |||||||    
T  31975103 aaacgagttgaggtaaactctcgagttgcaaaacct 31975068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 16228 - 16139
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  16228 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 16139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 19484882 - 19484971
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  19484882 ggtaaactcgtacgagtttacgattcgagtttacgagtcgagtttacctaggtaaaacgagttgaggtaaactctcgagttgcaaaacct 19484971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 41252544 - 41252619
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41252544 tatttaaacgagaaaatggaacaattgaagttaaagttacaactgaagatgaaacagagtttaaatgtactgataa 41252619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 6387291 - 6387202
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||| ||  ||| ||||||||| || | |||||||| ||   |||||||||||||||||||||| ||||||||||||||    
T  6387291 ggtaaactcgtacgaattctcgaatcgagtttaagagtggagtttacctaagcaaaacgagttgaggtaaactcttgagttgtaaaacct 6387202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 26620017 - 26619929
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||  |||||||||||||||| |||| ||||| ||   |||||||||||  |||||||||||| |||||||||||    
T  26620017 ggtaaactcgtacgagttctcgagtcgagtttacgagtcga-tttacctaaacaaaacgagttgtagtaaactctcgaattgtaaaacct 26619929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 28316788 - 28316746
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaac 70  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  28316788 tatttaaatgaaaaaatggaacaattgaagttaaagttacaac 28316746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 27869164 - 27869075
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||| ||||||  |||||||| ||||||| |||| ||||| ||   ||||||| ||||||||||||||||| ||| |||||||    
T  27869164 ggtaaactcgttcgagttctcgagtcgaatttacgaatcgaatttacctaagcaaaacgaattgaggtaaactctcgaattgcaaaacct 27869075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 3007169 - 3007133
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||    
T  3007169 aaaacgagttgaggtaaactctcgagttgtaaaacct 3007133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 41394614 - 41394650
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||||||||||||||||||||||||||||    
T  41394614 aaaacgagttgaggtaaactctcgagttgtaaaacct 41394650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 33177267 - 33177216
Alignment:
Q  269 cgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||| |||||| ||||  |||||||||||||||||||||||||    
T  33177267 cgagtttacataggtaaaacaagttacggtaaactctcgagttgtaaaacct 33177216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 4870544 - 4870482
Alignment:
Q  256 cgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||||||| ||||||||||  ||||| |||||||||| |||||||  ||||||||||    
T  4870544 cgagtttacgattcaagtttacataagtaaaatgagttgaggttaactctcttgttgtaaaac 4870482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 24082922 - 24082972
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    |||||||||| |||  ||||||||||||||||||||||||||||| |||||    
T  24082922 tcgagtttacctaggcaaaacgagttgaggtaaactctcgagttgcaaaac 24082972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 41252744 - 41252806
Alignment:
Q  258 agtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||| ||||||||||||||||||||||| ||  |||| |||||||| ||||| ||||||||    
T  41252744 agtttaagattcgagtttacatagctaaaatgaactgagataaactcttgagttataaaacct 41252806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 7761225 - 7761310
Alignment:
Q  233 taaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaac 318  Q
    ||||||||||||||||  ||||| |||||||||| || | |||||  |   ||||||||||||||||| ||||| |||||||||||    
T  7761225 taaactcgtacgagttctcgagttgagtttacgagtcaaatttactcaaacaaaacgagttgaggtaacctctcaagttgtaaaac 7761310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 27974356 - 27974267
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||  ||||||||  |||||||||||||| | |||||||||| |||  ||||  | ||||||||||||||||||||  |||||||    
T  27974356 ggtaaacttatacgagttctcgagtcgagtttacaagtcgagtttacctagacaaaataaattgaggtaaactctcgagttacaaaacct 27974267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 28031625 - 28031536
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||  ||||||||  |||||||||||||| | |||||||||| |||  ||||  | ||||||||||||||||||||  |||||||    
T  28031625 ggtaaacttatacgagttctcgagtcgagtttacaagtcgagtttacctagacaaaataaattgaggtaaactctcgagttacaaaacct 28031536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 8029220 - 8029168
Alignment:
Q  268 tcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||| |||   |||||||||||||||||||||||||||| |||||||    
T  8029220 tcgagtttacctaggcgaaacgagttgaggtaaactctcgagttgcaaaacct 8029168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 12737433 - 12737397
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12737433 aaaacgagttgaggtaaactctcgaattgtaaaacct 12737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 18985068 - 18985117
Alignment:
Q  271 agtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||| |||  ||||| ||||||||||||||||||||||| |||||||    
T  18985068 agtttacctagacaaaacaagttgaggtaaactctcgagttgcaaaacct 18985117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 42423956 - 42423992
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  42423956 aaaacgagttgaggtaaactctcaagttgcaaaacct 42423992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 44977492 - 44977528
Alignment:
Q  284 aaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    |||||||||||| |||||||||||||||| |||||||    
T  44977492 aaaacgagttgaagtaaactctcgagttgcaaaacct 44977528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 2092 - 2167
Alignment:
Q  28 tatttaaatgagaaaatggaacaattgaagttaaagttacaactgaagatgaaaaagagtttaaatgtactaataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  2092 tatttaaatgagaaaatggaacaattgaagttaaagttacaactaaagatgaaacagagtttaaatgtactcataa 2167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 38504 - 38593
Alignment:
Q  231 ggtaaactcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaacct 320  Q
    ||||||||| |||| |||||| | ||||||| ||||||| ||||||||||  |||||| ||||||||||||||||| |||| ||| ||||    
T  38504 ggtaaactcatacgggtttacaaatcgagttcacgattcaagtttacataagtaaaacaagttgaggtaaactctcaagttataacacct 38593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 174517 - 174597
Alignment:
Q  237 ctcgtacgagtttacgagtcgagtttacgattcgagtttacatagctaaaacgagttgaggtaaactctcgagttgtaaaa 317  Q
    |||||| |||||  ||| |||||||||||| || ||||||  ||  ||||| |||||||  ||||||||||||||||||||    
T  174517 ctcgtaagagttctcgaatcgagtttacgagtcaagtttatttaagtaaaatgagttgaactaaactctcgagttgtaaaa 174597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University