View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_26 (Length: 306)
Name: NF2683_high_26
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26056474 - 26056606
Alignment:
| Q |
8 |
gagcacagatattcagtacttggactttgatactgaatttgattgaactactagcctctcaaacat--tcttgatgggaatatgagaattcatctatacc |
105 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26056474 |
gagcacagatattcagtacttcgactttgaaactgaatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacc |
26056573 |
T |
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| Q |
106 |
tatatatagaaaaaggaatgtgtgattttggag |
138 |
Q |
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| T |
26056574 |
tatatatagaaaaaggaatgtgtgattttggag |
26056606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 26085711 - 26085817
Alignment:
| Q |
8 |
gagcacagatattcagtacttggactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta |
107 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085711 |
gagcgcagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta |
26085810 |
T |
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| Q |
108 |
tatatag |
114 |
Q |
| |
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||||||| |
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| T |
26085811 |
tatatag |
26085817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 26112067 - 26112173
Alignment:
| Q |
31 |
actttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtga |
130 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
26112067 |
actttgaaactgaatttgattgaactactagcctctcaaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtga |
26112166 |
T |
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| Q |
131 |
ttttgga |
137 |
Q |
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||||||| |
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| T |
26112167 |
ttttgga |
26112173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 26086401 - 26086471
Alignment:
| Q |
218 |
gtaatgttaagaataccaacccaactatcctttgggtcgtccacaataaatgggttaagtcaaggtccagg |
288 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26086401 |
gtaatgttaagaataccgacccaattatcctttgggtcgtctacaataaatgggttaagtcaaggtccagg |
26086471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 26112275 - 26112325
Alignment:
| Q |
236 |
acccaactatcctttgggtcgtccacaataaatgggttaagtcaaggtcca |
286 |
Q |
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| T |
26112275 |
acccaattatcctttgggtcgtccataataaatgagttaagtcaagatcca |
26112325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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