View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_high_28 (Length: 299)

Name: NF2683_high_28
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_high_28
NF2683_high_28
[»] chr4 (18 HSPs)
chr4 (3-284)||(2533897-2534178)
chr4 (4-278)||(5035207-5035481)
chr4 (3-286)||(2525339-2525622)
chr4 (7-286)||(2490716-2490995)
chr4 (7-279)||(2518821-2519093)
chr4 (89-286)||(2467212-2467412)
chr4 (140-285)||(2486021-2486173)
chr4 (96-228)||(2547221-2547353)
chr4 (90-213)||(2621417-2621540)
chr4 (168-213)||(2361217-2361262)
chr4 (168-217)||(2381641-2381690)
chr4 (168-217)||(2391269-2391318)
chr4 (168-208)||(12124594-12124634)
chr4 (168-198)||(2482529-2482559)
chr4 (95-149)||(5106632-5106686)
chr4 (7-52)||(2477156-2477201)
chr4 (97-149)||(2367981-2368033)
chr4 (173-224)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 2533897 - 2534178
Alignment:
Q  3 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 102  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2533897 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcgcacaattatggggacaaccagagtcggtaaggatgagttc 2533996  T
Q  103 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 202  Q
    ||| ||  ||||||||||||||||||| | |  ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  2533997 ttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttcttg 2534096  T
Q  203 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagaga 284  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  2534097 gacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaagtggaagtagaga 2534178  T

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Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 5035207 - 5035481
Alignment:
Q  4 agttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttct 103  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  5035207 agttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggattagttct 5035306  T
Q  104 tcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttgg 203  Q
    |||||  ||||||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| ||    
T  5035307 tcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatcttctcgg 5035406  T
Q  204 acaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaag 278  Q
    |||||||||| |||||||||||||| || ||| ||| |||||| |||||||| |||||||||| |||||||||||    
T  5035407 acaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaag 5035481  T

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Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 2525339 - 2525622
Alignment:
Q  3 gagttaaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttc 102  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||  |||| |||    ||||||||||||||||||||||||||||    
T  2525339 gagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcacacagttactacgacaaccagtgtcggtaaggatgagttc 2525438  T
Q  103 ttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttg 202  Q
    ||||||   |||||||||||||||||||| |   |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  2525439 ttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaatttttcattttcttg 2525538  T
Q  203 gacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatt 286  Q
    |||||| | || |||||||||| ||| ||  ||   ||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  2525539 gacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagatt 2525622  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 2490716 - 2490995
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 106  Q
    |||||||||| ||||||||||||||||| |||  ||| |||||||| | ||||   || |||| ||||||  |||  ||||||| ||||||||||| |||    
T  2490716 taaagcaatcttgcggagtttgggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcg 2490815  T
Q  107 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 206  Q
    ||  ||||||||||||||||||| |    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||  |||||    
T  2490816 agtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatcgtcccggaca 2490915  T
Q  207 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagatt 286  Q
    ||||||| || |||||| | || || |||   || | |||||||| ||| ||||||||||| |||||| |||| ||||||    
T  2490916 aagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagatt 2490995  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 2518821 - 2519093
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatcactatctatagcacaattatggggacaaccagtgtcggtaaggatgagttcttcg 106  Q
    |||||||||| |||||||||| |||||||||| |||| ||  |||| |||||||  |  ||| || || | ||   || ||||||||||||||||||| |    
T  2518821 taaagcaatcttgcggagtttaggaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatgagttctttg 2518920  T
Q  107 agggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcatcttcttggaca 206  Q
    ||  ||||||||||||||||||||| |  |||||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| || |  ||||    
T  2518921 agtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgttttgagaca 2519020  T
Q  207 aagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagt 279  Q
    ||||| | ||| | | || ||| |   ||  ||| |||||||||||||| ||| |||||||||||||| ||||    
T  2519021 aagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagt 2519093  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 2467212 - 2467412
Alignment:
Q  89 gtaaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgata---aatctcatttgataacaagtgagagatgtca 185  Q
    ||||||||||| ||||||||  ||||||||||||||||||||| |   ||||| ||||||| ||||   ||    ||| | ||||||||||| |||||||    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 2467311  T
Q  186 aatttttcatcttcttggacaaagctcggaactcattttcaggcacactgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagat 285  Q
    ||||||||||||  ||||| |||||||| ||| ||| | |||| ||  |    ||||||||||||||||| ||||||||||| |||||| |||| |||||    
T  2467312 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 2467411  T
Q  286 t 286  Q
    |    
T  2467412 t 2467412  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 2486021 - 2486173
Alignment:
Q  140 tcattcttgttgataaatctcatttgataacaagtga-------gagatgtcaaatttttcatcttcttggacaaagctcggaactcattttcaggcaca 232  Q
    |||||||||||||||||||| |||| ||||||| |||       |||||||||||||||||||||| |||||||||||||| |   ||||| |||| |      
T  2486021 tcattcttgttgataaatctaattttataacaattgactattgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagc 2486120  T
Q  233 ctgtcagggtggtagagagtgagtgatttgaggtctaaaggggaagtagagat 285  Q
    |||   || | |||||||||||||||||||||||| |||||| |||| |||||    
T  2486121 ctgatgggctcgtagagagtgagtgatttgaggtccaaagggaaagtggagat 2486173  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 2547221 - 2547353
Alignment:
Q  96 tgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatttttcat 195  Q
    |||||||||| ||  ||||||||||||||||||||| |   | |||||||||| |||||||  | ||||   ||||| ||||||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  196 cttcttggacaaagctcggaactcattttcagg 228  Q
    ||| |  ||||||||||| ||| ||||| ||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcagg 2547353  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 2621540 - 2621417
Alignment:
Q  90 taaggatgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgttgataaatctcatttgataacaagtgagagatgtcaaatt 189  Q
    ||||| |||||||||||||  |||||||||||||||||| || |   ||||||||||||  |||     | ||| | |||||||||||||||||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt 2621441  T
Q  190 tttcatcttcttggacaaagctcg 213  Q
    |||||| || ||||| ||||||||    
T  2621440 tttcatatttttggagaaagctcg 2621417  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcg 213  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 2381690 - 2381641
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 217  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2381641  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 2391318 - 2391269
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaagctcggaac 217  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaac 2391269  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatcttcttggacaaa 208  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 2482529 - 2482559
Alignment:
Q  168 aacaagtgagagatgtcaaatttttcatctt 198  Q
    |||||||||||||||||||||||||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctt 2482559  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  95 atgagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 149  Q
    ||||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 2477156 - 2477201
Alignment:
Q  7 taaagcaatcctgcggagtttgggaagcgccaggaatcgatcatca 52  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||||    
T  2477156 taaagcaatcttgcggagtttgggaagcgccaacaattgatcatca 2477201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  97 gagttcttcgagggaagggaaacaatcagcaatgatgttgagatcattcttgt 149  Q
    ||||||||||||  ||||||||||||||||||||| |  ||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 2393888 - 2393836
Alignment:
Q  173 gtgagagatgtcaaattttt-catcttcttggacaaagctcggaactcatttt 224  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| ||||||    
T  2393888 gtgagagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttt 2393836  T

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