View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_high_3 (Length: 603)

Name: NF2683_high_3
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_high_3
NF2683_high_3
[»] chr8 (8 HSPs)
chr8 (267-592)||(40866294-40866619)
chr8 (16-267)||(40865991-40866246)
chr8 (268-346)||(7895149-7895227)
chr8 (269-345)||(44415934-44416010)
chr8 (267-345)||(42014306-42014384)
chr8 (267-351)||(38085941-38086025)
chr8 (272-346)||(24864608-24864682)
chr8 (271-344)||(9963285-9963358)
[»] chr4 (8 HSPs)
chr4 (267-349)||(50968241-50968323)
chr4 (267-346)||(6067669-6067748)
chr4 (272-345)||(34505290-34505363)
chr4 (267-346)||(31553694-31553773)
chr4 (267-346)||(33871036-33871115)
chr4 (271-345)||(4690134-4690208)
chr4 (272-345)||(52818059-52818132)
chr4 (272-346)||(6071145-6071218)
[»] chr6 (7 HSPs)
chr6 (267-346)||(3992802-3992881)
chr6 (267-346)||(7432415-7432494)
chr6 (267-346)||(7441932-7442011)
chr6 (267-346)||(7425620-7425699)
chr6 (271-344)||(7432982-7433055)
chr6 (267-346)||(7418529-7418608)
chr6 (267-346)||(7414580-7414659)
[»] chr3 (9 HSPs)
chr3 (272-346)||(29618312-29618386)
chr3 (267-349)||(41552097-41552179)
chr3 (267-346)||(11580203-11580282)
chr3 (272-344)||(1488013-1488085)
chr3 (272-344)||(2031252-2031324)
chr3 (272-344)||(35679472-35679544)
chr3 (272-346)||(35687869-35687943)
chr3 (272-346)||(52638656-52638730)
chr3 (299-346)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (271-345)||(3197568-3197642)
chr2 (267-346)||(4713105-4713184)
chr2 (272-347)||(24359790-24359865)
chr2 (266-349)||(34642998-34643081)
chr2 (272-347)||(39082467-39082542)
chr2 (267-346)||(8884447-8884526)
chr2 (272-352)||(42968144-42968224)
chr2 (271-346)||(36772397-36772472)
chr2 (271-346)||(36793511-36793586)
chr2 (271-346)||(37559326-37559401)
chr2 (272-346)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (271-348)||(37022194-37022271)
chr7 (267-348)||(46075147-46075228)
chr7 (267-349)||(25287957-25288039)
chr7 (268-346)||(30034301-30034379)
chr7 (267-344)||(46972134-46972211)
chr7 (272-349)||(34984430-34984507)
[»] chr1 (10 HSPs)
chr1 (267-347)||(30340906-30340986)
chr1 (270-349)||(23058051-23058130)
chr1 (263-348)||(37369502-37369588)
chr1 (270-344)||(23057679-23057753)
chr1 (270-344)||(23057864-23057938)
chr1 (270-344)||(23061980-23062054)
chr1 (267-345)||(30320740-30320818)
chr1 (286-339)||(23057568-23057621)
chr1 (286-339)||(23061869-23061922)
chr1 (271-344)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (271-346)||(2626071-2626146)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 267 - 592
Target Start/End: Original strand, 40866294 - 40866619
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttattcaatttaaattatt 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866294 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttattcaatttaaattatt 40866393  T
Q  367 ataaacatatctcttaggaaatcnnnnnnnttataagtggaattctcttgtttcttaaaattttaagttaattcaaatatcttttatttcatgtcagtaa 466  Q
    ||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866394 ataaagatatctcttaggaaatcaaaaaaattataagtggaattctcttgtttcttaaaattttaagttaattcaaatatcttttatttcatgtcagtaa 40866493  T
Q  467 atactagtaagaccctatttggcaaaacagaattttgaaattacagcttatatatatgctcatataacaaaagaagacatgtttgataacatattttttc 566  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866494 atactagtaagaccctatttggtaaaacagaattttgaaattacagcttatatatatgctcatataacaaaagaagacatgtttgataacatattttttc 40866593  T
Q  567 ttctcatgagcttgtatctttttctt 592  Q
    ||||||||||||||||| ||||||||    
T  40866594 ttctcatgagcttgtatatttttctt 40866619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 40865991 - 40866246
Alignment:
Q  16 aatagaactttagggagaaattaatggatgtatgtgttacaatctattttgcttcctttacaatgtatccacacatttgttatgcttccacg--ttttat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||| |    
T  40865991 aatagaactttagggagaaattaatggatgtatgtgttacaatctattttgatttctttacaatgtatccacacatttgttatgcttccacgtttttttt 40866090  T
Q  114 ttattttttacaaacaaacatgcttccacgttaatatgtttctttttgttattcataaaaaattcaataacca--nnnnnnnnnnnngataagtatatca 211  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||              |||||||||||||    
T  40866091 tttttttttacaaacaaacatgcttccacgttaatatgtttctttttgttatccataaaaaattcaataaccaatatatatatatatgataagtatatca 40866190  T
Q  212 tgtaaagtcacttccacaggtaagtaacttttctccatccaaattcataataatca 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40866191 tgtaaagtcacttccacaggtaagtaacttttctccatccaaattcgtaataatca 40866246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 7895149 - 7895227
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7895149 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 7895227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 44416010 - 44415934
Alignment:
Q  269 aaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  44416010 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 42014384 - 42014306
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  42014384 aaaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccca 42014306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 38086025 - 38085941
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttat 351  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  38086025 aaaagtggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatattat 38085941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 9963285 - 9963358
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963285 atggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

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Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 50968241 - 50968323
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968241 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 50968323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 6067748 - 6067669
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067748 aaaaatggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 31553773 - 31553694
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31553773 aaaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 31553694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 33871036 - 33871115
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871036 aaaagtggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 4690134 - 4690208
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690134 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    ||||||||| ||| ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6071218 tggagatgcgggg-atcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 3992802 - 3992881
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992802 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 7432415 - 7432494
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432415 aaaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 7441932 - 7442011
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||| ||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441932 aaaaatggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 7425620 - 7425699
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||| ||| | |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425620 aaaaatggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 7432982 - 7433055
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    |||||||||||||| ||||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432982 atggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 7418529 - 7418608
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| |||| ||| | |||||| |||||| ||||| |||||||| || |||||| ||||||||||||||||    
T  7418529 aaaaatggagatgtggggtatcaatccccgtccctctcacatgctaagcgagcactataccatctgagctacatccccat 7418608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 7414580 - 7414659
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||| |||  || ||||| |||| | |||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414580 aaaaatggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 41552179 - 41552097
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  41552179 aaaattggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccatgtt 41552097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 11580282 - 11580203
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11580282 aaaattggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 11580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 35679544 - 35679472
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679544 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 35687943 - 35687869
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 52638656 - 52638730
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||  || ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccat 52638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 35692264 - 35692217
Alignment:
Q  299 cctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692264 cctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 3197642 - 3197568
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3197642 atggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 3197568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 4713105 - 4713184
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713105 aaaactggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 4713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 24359865 - 24359790
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 347  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 24359790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 34642998 - 34643081
Alignment:
Q  266 caaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  34642998 caaaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgtt 34643081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 39082542 - 39082467
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 347  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 39082467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 8884526 - 8884447
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884526 aaaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 42968224 - 42968144
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttatt 352  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccatattatt 42968144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 36772397 - 36772472
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772397 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 36793511 - 36793586
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793511 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 37559326 - 37559401
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559326 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 37022194 - 37022271
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37022194 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 46075147 - 46075228
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    |||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46075147 aaaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 46075228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 25288039 - 25287957
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  25288039 aaaagtggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgtt 25287957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 30034379 - 30034301
Alignment:
Q  268 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034379 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 46972134 - 46972211
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972134 aaaaatggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 34984430 - 34984507
Alignment:
Q  272 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccttgtt 34984507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 30340906 - 30340986
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 347  Q
    |||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340906 aaaaatggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 30340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 23058051 - 23058130
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 349  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  23058051 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccttgtt 23058130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 37369502 - 37369588
Alignment:
Q  263 aatcaaaaa-tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 348  Q
    ||||||||| ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37369502 aatcaaaaagtggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 37369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23057679 - 23057753
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23057679 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23057864 - 23057938
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23057864 aatggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 23061980 - 23062054
Alignment:
Q  270 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 344  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23061980 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 30320740 - 30320818
Alignment:
Q  267 aaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 345  Q
    |||||||||||||| ||| ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30320740 aaaaatggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 30320818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 23057568 - 23057621
Alignment:
Q  286 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 339  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23057568 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 23061869 - 23061922
Alignment:
Q  286 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 339  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23061869 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 43066074 - 43065996
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaa-----gcgagcgctctaccatttgagctacatcccc 344  Q
    |||||||||||||| ||||| |||||| |||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066074 atggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 2626071 - 2626146
Alignment:
Q  271 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 346  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626071 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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