View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_high_36 (Length: 246)

Name: NF2683_high_36
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_high_36
NF2683_high_36
[»] chr2 (8 HSPs)
chr2 (1-94)||(31438492-31438585)
chr2 (118-210)||(31432053-31432146)
chr2 (1-86)||(31435434-31435519)
chr2 (118-210)||(31435615-31435708)
chr2 (1-85)||(31431874-31431958)
chr2 (1-86)||(31424543-31424629)
chr2 (118-154)||(31438609-31438645)
chr2 (195-237)||(31432162-31432204)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 31438492 - 31438585
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaaccttgacc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31438492 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaaccttgacc 31438585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 31432053 - 31432146
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagt-atttattctcttccttgagtcaaaataaagataataaaacttccatatttgtctctataa 210  Q
    |||||||||| || ||||||| | |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  31432053 ttaataagattatttatgcacttttatagtagttatttattctcttcattgagtcaaaataaagataataaaacttctatatttgtctctataa 31432146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31435434 - 31435519
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaa 86  Q
    ||||||||||||||| |||| ||||| |||  |||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  31435434 tattagtcattgcatcaagcgtagattaataaatgagatttgatgtcaaatttaattggagcatatattaaatatatttaatgcaa 31435519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 31435615 - 31435708
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagt-atttattctcttccttgagtcaaaataaagataataaaacttccatatttgtctctataa 210  Q
    |||||||||| || ||||||||| | || |||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||    
T  31435615 ttaataagattatttatgcacatttgtagtagttatttattctcttcattgagtcaaaataaagataatataacttctatatttgtctctataa 31435708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31431874 - 31431958
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgca 85  Q
    ||||||||||||||| | |  ||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||    
T  31431874 tattagtcattgcatcacgggtagataaatggatgagatttgatatcaaatttaatttaaccatatatcaaatatatttaatgca 31431958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31424543 - 31424629
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaa-tttaatttgaccatatattaaatatatttaatgcaa 86  Q
    ||||| |||||| || |||||||||||||  |||| ||||| |||| ||| ||| |||||||||||||||||||||||| |||||||    
T  31424543 tattattcattggatcaagcatagataaacagatgcgatttaatgtcaaaatttgatttgaccatatattaaatatattgaatgcaa 31424629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 31438609 - 31438645
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagtattt 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  31438609 ttaataagataatgtatgcacatgtataatagtattt 31438645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 31432162 - 31432204
Alignment:
Q  195 atatttgtctctataaatagcctctaactgatgtttcatcttc 237  Q
    ||||||||||||||||||| ||||||||||||| | |||||||    
T  31432162 atatttgtctctataaatatcctctaactgatggtgcatcttc 31432204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University