View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_40 (Length: 242)
Name: NF2683_high_40
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3924008 - 3923785
Alignment:
| Q |
1 |
ccgttagtcaggaaaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaa |
100 |
Q |
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| T |
3924008 |
ccgttagtcaggaaa-tcacacattaaaccaattacatgataatacatggaccgttaaatcttgattagataaattcaagttccaactttggtaaatcaa |
3923910 |
T |
|
| Q |
101 |
gtctgtaatgataatacaaagtcaaaacatatgccttctactcttgatccatcggttcagtacttatcagtgactatgtgtaattgtgtgaatatggaac |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
3923909 |
gtctgtaatgatgatacaaagtcaaaacatatgccttctactcttgatccatcagttcggtacttatcagtaactatgtgtaattgtgtgaatatggaac |
3923810 |
T |
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| Q |
201 |
attacggaacatcacacgtcaaaca |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
3923809 |
attacggaacatcacacgtcaaaca |
3923785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 3907577 - 3907389
Alignment:
| Q |
14 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3907577 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgata |
3907478 |
T |
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| Q |
114 |
atacaaagtcaaaacatatgccttctactcttgatccatcggttcagtacttatcagtgactatgtgtaattgtgtgaatatggaacat |
202 |
Q |
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| T |
3907477 |
atacatagtggaaacatatgccttctaatcttgatccatcagttcggtacttaacaatgactatatgtaattgtgtgaatccggaacat |
3907389 |
T |
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