View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_42 (Length: 241)
Name: NF2683_high_42
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7937259 - 7937044
Alignment:
| Q |
1 |
cccaaaaaccccctcacaaaacgccaacaaaataacaactaattttccatttctccaccaaaaatatactatcattcttagctgtgt--actgttactaa |
98 |
Q |
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| T |
7937259 |
cccaaaaaccccctcacaaaacgccaacaaaataacaactaattttccatttctccaccaaaaatatact--cattcttagctgtgtgtaccgttactaa |
7937162 |
T |
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| Q |
99 |
acagtgggccatgcacgtgtttctctcttcacttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccatttt |
198 |
Q |
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| T |
7937161 |
acagtgggccatgcacgtgtttctctcttcacttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccatttt |
7937062 |
T |
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| Q |
199 |
ctcatcaccattcacttt |
216 |
Q |
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|||||||||||||||||| |
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| T |
7937061 |
ctcatcaccattcacttt |
7937044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 7953101 - 7953053
Alignment:
| Q |
97 |
aaacagtgggccatgcacgtgtttctctcttcacttcacaacatcatca |
145 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
7953101 |
aaacagtgggccatgcacgtgttttgcccttcacttcacatcatcatca |
7953053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 7953023 - 7952991
Alignment:
| Q |
190 |
tcccattttctcatcaccattcactttctctct |
222 |
Q |
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| T |
7953023 |
tcccattttctcatcacaattcactttctctct |
7952991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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