View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_46 (Length: 236)
Name: NF2683_high_46
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5637572 - 5637351
Alignment:
| Q |
1 |
ttgatcgttccagttcctttgcatttcgcgcaagccgttcttcttacattgccacatcgcttgcacaaccccaatgagctgcaagaaaaggtttgtggta |
100 |
Q |
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| T |
5637572 |
ttgatcgttccagttcctttgcatttcgcgcaagccgttcttcttacattgccacatcgcttgcacaaccccaatgagctgcaagaaaaggtttgtggta |
5637473 |
T |
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| Q |
101 |
cataagtcaaaataaagggaggaaaaagaaaaatctaaagcgtcataaagtttggttgttttcataaccagtttaattaaacgctaataacaaaagcgtt |
200 |
Q |
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| T |
5637472 |
cataattcaaaataaagggaggaaaaagaaaaatctaaagtgtcataaagtttggttgttttcataaccagtttaattaaatgctaataacaaaagcgtt |
5637373 |
T |
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| Q |
201 |
tatcatataagtgcttatttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5637372 |
tatcatataagtgcttatttat |
5637351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 15511511 - 15511463
Alignment:
| Q |
170 |
agtttaattaaacgctaataacaaaagcgtttatcatataagtgcttat |
218 |
Q |
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| T |
15511511 |
agtttaattaaacgctaattacaaaaaagcttatcatgtaagtgcttat |
15511463 |
T |
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