View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_high_9 (Length: 443)
Name: NF2683_high_9
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 38342634 - 38343051
Alignment:
| Q |
17 |
ataagtgtagtgtgaggtgctgagtgcagaagtttatcagtgtgcagcaatgtgactgatttgtgtaatcaaactgtaactttcctttcttaggactact |
116 |
Q |
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| T |
38342634 |
ataagtgtagtgtgaggtgctgggtgcagaagtttatcagtgtgcagcaatgtgactgatttatgtaatcaaactgtaactttcctttcttaggactact |
38342733 |
T |
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| Q |
117 |
tgtggactgtggtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaaggnnnnnnntcaggtatttacatttttctcttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38342734 |
tgtggactgtggtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaagaaaaaaaatcaggtatttacatttttctcttc |
38342833 |
T |
|
| Q |
217 |
agtatcatcttgcagcaaaa-aattagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtc |
315 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342834 |
agtatcatcttgcagcaaaaaaattagccaatgtgggactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtc |
38342933 |
T |
|
| Q |
316 |
gcttttgaagcccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38342934 |
gcttttgaagcccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcctggtttttcggcagt |
38343033 |
T |
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| Q |
416 |
tcttccattctacctatg |
433 |
Q |
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| T |
38343034 |
tcttccattctacctatg |
38343051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 38335478 - 38335582
Alignment:
| Q |
315 |
cgcttttgaagcccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcag |
414 |
Q |
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|||||||||||||| |||||||||| | |||| || ||||||||||||| |||||| |||||| |||||||||| |||||||||| ||| | ||||| |
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| T |
38335478 |
cgcttttgaagcccgcgtttaggctaacctctaatgaattatcaataacttccaaactcttgttgctgtcaagaaaagaaccttccccatttgtaggcag |
38335577 |
T |
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| Q |
415 |
ttctt |
419 |
Q |
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||||| |
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| T |
38335578 |
ttctt |
38335582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 38334142 - 38334248
Alignment:
| Q |
198 |
tatttacatttttctcttcagtatcatcttgcagcaaaaaattagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttc |
297 |
Q |
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||||||| | ||||||| ||| ||| |||||| |||||| | |||||||||| ||||||||| |||||||||||| | ||||||| |||||||||| |
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| T |
38334142 |
tatttacttctttctctccagcatcgtcttgctgcaaaaggtcagccaatgtgggactatctggagaatttgtcaagcc---ttcatgccttggaatttc |
38334238 |
T |
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| Q |
298 |
agatgttgga |
307 |
Q |
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|||||||||| |
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| T |
38334239 |
agatgttgga |
38334248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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