View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683_low_1 (Length: 718)
Name: NF2683_low_1
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 697
Target Start/End: Complemental strand, 37321061 - 37320378
Alignment:
| Q |
11 |
cagagacatttttcatagtaatagcattcttataagttcattatcggatcctcaacaagaacaacaacataaagcattcttagttcattcacatcaacca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37321061 |
cagagacatttttcatagtaatagcattcttataagttcattatccgatcctcaacaacaacaacaa---aaagcattcttagttcattcacatcaacca |
37320965 |
T |
|
| Q |
111 |
tggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37320964 |
tggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcct |
37320865 |
T |
|
| Q |
211 |
atccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaaccaagcatggtatttgta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37320864 |
atccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtatttgta |
37320765 |
T |
|
| Q |
311 |
gctgagcctaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccattgacggctggtcctgaacgtgactcgaaacttg |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||| || ||||||| |
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|
| T |
37320764 |
gctgagcccaatggcaaggtaaaaaatgccttgccattcgggacagttgtggcgatggatgaccccttgacggctggacccgaacgtgaatcaaaacttg |
37320665 |
T |
|
| Q |
411 |
tgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
510 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
37320664 |
tgggtaaggctcaaggaatttacacctctatatcacaagaggagatgggactaatgatggtgatgaccatgacattcactgatggacatttcaatggaag |
37320565 |
T |
|
| Q |
511 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37320564 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtggttat |
37320465 |
T |
|
| Q |
611 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggt |
697 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||| |
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| T |
37320464 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgacatatttatgttccattattagttaggt |
37320378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 85 - 702
Target Start/End: Complemental strand, 37317414 - 37316794
Alignment:
| Q |
85 |
cattcttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatccctt |
181 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||| ||| |||| || |||| ||||||||||||||||||||| |||| |||||||||||| |
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| T |
37317414 |
cattctttgttcattcgcatcaaccatggcaaaatcctcaacattctccataactcttctaatttctttgaaccttactttcctctctataatatccctt |
37317315 |
T |
|
| Q |
182 |
gccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgt |
281 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37317314 |
gccactgccactaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgt |
37317215 |
T |
|
| Q |
282 |
caggaccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccattgac |
381 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37317214 |
caggaccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccattgac |
37317115 |
T |
|
| Q |
382 |
ggctggtcctgaacgtgactcgaaacttgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatg |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317114 |
tgctggtcctgaacgtgactcgaaacttgtgggtaaggctcaaggaatttacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatg |
37317015 |
T |
|
| Q |
482 |
gcattcactgatggagatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37317014 |
gcattcactgatggagatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaa |
37316915 |
T |
|
| Q |
582 |
ctggggcttttcgttttgtacgtgggtatgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtatt |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316914 |
ctggggcttttcgttttgtacgtgggtatgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtatt |
37316815 |
T |
|
| Q |
682 |
ccattattagctaggtgtatt |
702 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37316814 |
ccattattagctaggtgtatt |
37316794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 90 - 696
Target Start/End: Complemental strand, 37324968 - 37324360
Alignment:
| Q |
90 |
ttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatcccttgccac |
186 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||| ||| ||| || |||| ||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
37324968 |
ttagttcattaaca-caaccatggcaaaatcctcaacattccccataactcttctaatttctttgaaccttactttcctctccataatatcccttaccac |
37324870 |
T |
|
| Q |
187 |
tgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcagga |
286 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| |
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|
| T |
37324869 |
ggccactaattactatcaaagcctatctccaacaatgctgggttttcaagaagagaaattcactcaccttcacttttactttcatgacattgtgtcggga |
37324770 |
T |
|
| Q |
287 |
ccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccattgacggctg |
386 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
37324769 |
ccaaaaccaagcatggtatttatagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgacggctg |
37324670 |
T |
|
| Q |
387 |
gtcctgaacgtgactcgaaacttgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcatt |
486 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37324669 |
ggcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttacacttctatatcacaagaggagatgggactaatgatggtgatgaccatggcatt |
37324570 |
T |
|
| Q |
487 |
cactgatggagatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggg |
586 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
37324569 |
cactgatggacattttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccatagttggtggaaccggg |
37324470 |
T |
|
| Q |
587 |
gcttttcgttttgtacgtgggtatgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccatt |
686 |
Q |
| |
|
|| |||||||| |||||||| |||||||| ||||| |||||||| |||||||| || |||||||||||| |||| || ||||| |||| || ||||||| |
|
|
| T |
37324469 |
gcatttcgtttcgtacgtggatatgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgacatatttgtgttccatt |
37324370 |
T |
|
| Q |
687 |
attagctagg |
696 |
Q |
| |
|
||||| |||| |
|
|
| T |
37324369 |
attagttagg |
37324360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 173 - 627
Target Start/End: Complemental strand, 37306978 - 37306524
Alignment:
| Q |
173 |
atatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacg |
272 |
Q |
| |
|
|||||||| || || ||||| |||||||| |||||| |||| ||| | || ||||||||||||||||||||||||| |||||||| || || || |||| |
|
|
| T |
37306978 |
atatccctggctacagccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttcacttctatttccacg |
37306879 |
T |
|
| Q |
273 |
acatcgtgtcaggaccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatga |
372 |
Q |
| |
|
|| | || ||| || ||| |||||| || | ||||| ||||| || ||||||| |||| | | ||||||||||| || |||||||||||||| |
|
|
| T |
37306878 |
acgttatggaaggccccaaagcaagcacagtgatagtagccgagcccaacggcaaggctgaaaactctcttccattcgggacagtggtggccatggatga |
37306779 |
T |
|
| Q |
373 |
cccattgacggctggtcctgaacgtgactcgaaacttgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtg |
472 |
Q |
| |
|
|| |||||| ||| ||||||| |||||||||||| |||||||| ||||||||||| ||| || |||||||||||| |||||||||||||||||||| |
|
|
| T |
37306778 |
tccgttgacgattgggcctgaacttgactcgaaactcgtgggtaaagctcaaggaatttacgctgtaatatcacaagatgagatgggactaatgatggtt |
37306679 |
T |
|
| Q |
473 |
atgaccatggcattcactgatggagatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattg |
572 |
Q |
| |
|
||||| ||| ||| | || ||||| || ||||||||||||||||| ||||||| ||| || |||||| ||||||||||| ||||||||||| | |||| |
|
|
| T |
37306678 |
atgacttgggcgttctcagagggagaatttaatggaagcacacttagtatattggctaggaacatgatcgtgagtgaacctattagagaaatgcctattg |
37306579 |
T |
|
| Q |
573 |
ttggtggaactggggcttttcgttttgtacgtgggtatgctcaagctaaatttta |
627 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
37306578 |
ttggtggaactggggctttcagatttgttcgtggttatgctcaagccaagtttta |
37306524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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