View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2683_low_18 (Length: 381)
Name: NF2683_low_18
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 11804247 - 11804610
Alignment:
| Q |
1 |
attgataggagtgctaattttgtgtatgtaaaggccatgtttatttgtaaatgtattcctaaccacaaactgtgatcttgatcgttgattaaaaatttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11804247 |
attgataggagtgctaattttgtgtatgtaaatgccatgtttatttgtaaatgtattcctaaccacaaactgtgatcttgatcgttgattaaaaatttag |
11804346 |
T |
|
| Q |
101 |
cccatataaacggattcctctggtttctaggaaattgggacccataaaaatttaaagttcagttgaaagttaagtaatgtgcataaannnnnnnagtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
11804347 |
cccatataaacggattcctctggtttctaggaaattgggacccataaaaatttaaagttcagttgaaagttaagtaatgtgcaaagagttttttagtatg |
11804446 |
T |
|
| Q |
201 |
gatttgaactttattttttcggaatgatttacacttaattgatgttcattaccaacttcaactaaataactctaataatctaatctataatcaattatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11804447 |
gatttgaactttattttttcggaatgatttacacttaattgaagttcattaccaacttcaactaaataactctaataatctaatctataatcaattatgt |
11804546 |
T |
|
| Q |
301 |
agatggactatttattgtgattttggtactctatagataactggtgcggctatttggtgcatga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11804547 |
agatggactatttattgtgattttggtactctatagataactggtgcggctatttggtgcatga |
11804610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 11811993 - 11812042
Alignment:
| Q |
3 |
tgataggagtgctaattttgtgtatgtaaaggccatgtttatttgtaaat |
52 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
11811993 |
tgataagagtgctaattttgtgtatgcaaatcccatgtttatttggaaat |
11812042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University