View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_20 (Length: 374)
Name: NF2683_low_20
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 32875102 - 32874758
Alignment:
| Q |
18 |
agatgtgaaaccaagtttggtttgcaaagatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaagatgttgagaagttt |
117 |
Q |
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| T |
32875102 |
agatgcgaaaccaagtttggtttgcaaagatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaagatgttgagaagttt |
32875003 |
T |
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| Q |
118 |
ggtgaagtagaagcagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaatgcagtagcataaac |
217 |
Q |
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| T |
32875002 |
ggtgaagtagaagcagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaatgcagtagcataaac |
32874903 |
T |
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| Q |
218 |
cataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattatttttgtcattagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874902 |
cataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattatttttgtcattagtt |
32874803 |
T |
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| Q |
318 |
ccatgtgatatttttgtgagtaaaatgtgtgcctggtatattctt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874802 |
ccatgtgatatttttgtgagtaaaatgtgtgcctggtatattctt |
32874758 |
T |
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