View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_21 (Length: 363)
Name: NF2683_low_21
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 33286698 - 33286856
Alignment:
| Q |
192 |
aatctaaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga |
291 |
Q |
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| T |
33286698 |
aatctcaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga |
33286797 |
T |
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| Q |
292 |
tctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtagataa |
350 |
Q |
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| T |
33286798 |
tcttactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataa |
33286856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 33286598 - 33286674
Alignment:
| Q |
118 |
taaataatgttacatattcaatacatctttattaaattctttttctaaaatagccattagaaaatttgaaaggtaat |
194 |
Q |
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| T |
33286598 |
taaataatgttacatagtcaatacatctttattaaattctttttctaaaatagccattagaaaatttgaaaggtaat |
33286674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 33286521 - 33286593
Alignment:
| Q |
5 |
aaaaaataatgacgtaatttgattcatgtaactgatatcatttgacggggtaagacttgattttatttggaga |
77 |
Q |
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| T |
33286521 |
aaaaaataatgacgtaatttgattcatgtaactgatatcatttgacgaggtaagacttgattttatttggaga |
33286593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 33141389 - 33141318
Alignment:
| Q |
261 |
acaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacat |
332 |
Q |
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| T |
33141389 |
acaaatagccttattctagttgcatttgtgatctcactgtgatcaacgataatgcaagactcatggctacat |
33141318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 33182838 - 33182747
Alignment:
| Q |
259 |
taacaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtagataa |
350 |
Q |
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| T |
33182838 |
taacaaacagccttcttttagttgcattcgtgatcttactatgatcaacaataatgcacgactcttggctacatcacacgaggggtacataa |
33182747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 33261421 - 33261479
Alignment:
| Q |
136 |
caatacatctttattaaattctttttctaaaatagccattagaaaatttgaaaggtaat |
194 |
Q |
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| T |
33261421 |
caatacgtctttattaaattatttttgtaaaatagccattaaaaaatgtgacaggtaat |
33261479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 33281580 - 33281638
Alignment:
| Q |
136 |
caatacatctttattaaattctttttctaaaatagccattagaaaatttgaaaggtaat |
194 |
Q |
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| T |
33281580 |
caatacgtctttattaaattatttttgtaaaatagccattaaaaaatgtgacaggtaat |
33281638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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