View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_23 (Length: 348)

Name: NF2683_low_23
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_23
NF2683_low_23
[»] chr1 (6 HSPs)
chr1 (1-333)||(3364029-3364362)
chr1 (252-328)||(3342700-3342776)
chr1 (237-311)||(2947192-2947266)
chr1 (246-308)||(4333570-4333632)
chr1 (258-309)||(1794136-1794187)
chr1 (251-326)||(2007913-2007988)
[»] chr2 (4 HSPs)
chr2 (246-305)||(20936180-20936239)
chr2 (246-327)||(39275300-39275381)
chr2 (239-311)||(20924564-20924636)
chr2 (251-305)||(20954421-20954475)
[»] chr4 (1 HSPs)
chr4 (125-178)||(21239087-21239140)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3364362 - 3364029
Alignment:
Q  1 caatcactcaaaatttggcataccattgaaagtttagctttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgactnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  3364362 caatcactcaaaatttggcataccattgaaagtttagctttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgactaaa 3364263  T
Q  101 nnnn-gaacataagattatgatttcaggagaataaaaataactatgaagagttttccacattgtaaataacttcagcttgtctcgacgcccttttgaatc 199  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364262 aaaaagaacataagattatgatttcaggagaataaaaataactatgaagagttttccacattgtaaataacttcagcttgtctcgacgcccttttgaatc 3364163  T
Q  200 aaaccagttctgtcaataacaccggtttcgcgtttagatcaggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatc 299  Q
     ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  3364162 gaaccagttctgtcaataactccggtttcgcgtttagatcaggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatc 3364063  T
Q  300 taattcagatttaaagccagagatgccatgcatc 333  Q
    ||||||||||||||||||||||||||||||||||    
T  3364062 taattcagatttaaagccagagatgccatgcatc 3364029  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 3342776 - 3342700
Alignment:
Q  252 catcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgccat 328  Q
    ||||||||||||  || ||||||||| ||| ||||||| |||||||||||||||||||||    |||||||||||||    
T  3342776 catcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgccat 3342700  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 2947192 - 2947266
Alignment:
Q  237 atcaggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagattt 311  Q
    ||||||| ||||||||| ||||||||| |   |||||| || ||| |||||| ||||||||||||||||||||||    
T  2947192 atcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagattt 2947266  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 4333570 - 4333632
Alignment:
Q  246 cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcaga 308  Q
    |||||||||||||||||| || |||||||||| ||| |||||| |||| |||| |||||||||    
T  4333570 cacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcaga 4333632  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 1794187 - 1794136
Alignment:
Q  258 ttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagat 309  Q
    |||||| ||| ||||||||| ||| |||||| ||||||||||||||||||||    
T  1794187 ttctaggacaggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 2007988 - 2007913
Alignment:
Q  251 tcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgcc 326  Q
    ||||||||||||| ||| | ||||  | ||| |||||| | |||||||||||||||||||| | ||||||||||||    
T  2007988 tcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcc 2007913  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 20936239 - 20936180
Alignment:
Q  246 cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattc 305  Q
    |||| ||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||    
T  20936239 cacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattc 20936180  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 39275381 - 39275300
Alignment:
Q  246 cacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagatttaaagccagagatgcca 327  Q
    ||||||||| |||||||| | | ||||||| |  || ||||||||||||||||||||||||||||| | ||||| |||||||    
T  39275381 cacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgcca 39275300  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 20924636 - 20924564
Alignment:
Q  239 caggcaccacaatcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattcagattt 311  Q
    ||||| |||||||||||||||  || ||| | ||||| | ||| |||||| ||||||||||||||||||||||    
T  20924636 caggctccacaatcatctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagattt 20924564  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 20954475 - 20954421
Alignment:
Q  251 tcatcttttctagtacaagagaatataaaagcagaaatttgataaaatctaattc 305  Q
    ||||||||||||| |   ||||||||| ||| |||||||||||||||||||||||    
T  20954475 tcatcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattc 20954421  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 21239140 - 21239087
Alignment:
Q  125 aggagaataaaaataactatgaagagttttccacattgtaaataacttcagctt 178  Q
    |||| ||||||| | | |||||||||| |||||||| |||||||||||||||||    
T  21239140 aggataataaaattcattatgaagagtcttccacatggtaaataacttcagctt 21239087  T

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