View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_29 (Length: 305)
Name: NF2683_low_29
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 11183875 - 11184141
Alignment:
| Q |
20 |
ctcaccaagccacacaacaatctttcctttttctttccgagtctcaaaaatgtttattccatatgtcacaatctttagagttgtactttagctaaagagg |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
11183875 |
ctcaccaagccacagaacaatctttcctttttctttccgagtctcaaaaatgtttattccatatgtcaaactctttggagttgtactttagctaaagagg |
11183974 |
T |
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| Q |
120 |
ttttaatcacctgatcatgttaatgaagaaagcacggtcaagggacaagttaaagctattcactctcctcatcttggtttggttttcaagagagtttaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11183975 |
ttttaatcacctgatcatgttaatgaagaaagcatggtcaagggacaagttaaagctattcactctcctcatcttggtttggttttcaagagagtttaaa |
11184074 |
T |
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| Q |
220 |
aacatatcccacactttagttagacttagatcattgttacttttatcacatttgtttgtctttgtct |
286 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11184075 |
aacatatcccacactatagttagacttagatcattgttactttgatcacatttgtttgtctttgtct |
11184141 |
T |
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