View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_3 (Length: 605)

Name: NF2683_low_3
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_3
NF2683_low_3
[»] chr7 (24 HSPs)
chr7 (294-562)||(3751374-3751642)
chr7 (291-562)||(47843647-47843913)
chr7 (337-562)||(45648144-45648370)
chr7 (346-558)||(40836368-40836583)
chr7 (291-535)||(42040334-42040576)
chr7 (341-535)||(43495674-43495872)
chr7 (359-562)||(48153007-48153213)
chr7 (341-562)||(45492134-45492368)
chr7 (297-520)||(25310891-25311101)
chr7 (338-562)||(25482527-25482763)
chr7 (292-543)||(42509175-42509414)
chr7 (399-562)||(22201077-22201239)
chr7 (399-562)||(22236582-22236744)
chr7 (291-562)||(2185624-2185884)
chr7 (425-562)||(34471737-34471874)
chr7 (346-465)||(45804918-45805037)
chr7 (124-194)||(3751206-3751276)
chr7 (362-487)||(7857938-7858065)
chr7 (452-562)||(22543398-22543506)
chr7 (385-450)||(22542930-22542995)
chr7 (44-91)||(3751114-3751161)
chr7 (291-339)||(43728123-43728171)
chr7 (369-400)||(22542830-22542861)
chr7 (343-506)||(44798121-44798285)
[»] chr2 (33 HSPs)
chr2 (291-560)||(41323867-41324133)
chr2 (291-560)||(42794651-42794918)
chr2 (348-562)||(7017811-7018028)
chr2 (338-534)||(37272830-37273027)
chr2 (291-538)||(30485592-30485838)
chr2 (362-562)||(38221559-38221760)
chr2 (364-562)||(11562673-11562869)
chr2 (341-562)||(17328683-17328911)
chr2 (354-531)||(36467215-36467394)
chr2 (291-510)||(30382685-30382903)
chr2 (341-484)||(40498676-40498821)
chr2 (420-562)||(35298411-35298555)
chr2 (342-541)||(44364268-44364465)
chr2 (343-562)||(16496719-16496941)
chr2 (341-521)||(40363830-40364009)
chr2 (383-538)||(38558613-38558768)
chr2 (291-444)||(38140833-38140989)
chr2 (434-562)||(38140558-38140690)
chr2 (417-560)||(2788882-2789025)
chr2 (455-562)||(40498557-40498664)
chr2 (474-562)||(35428741-35428829)
chr2 (424-535)||(3353117-3353228)
chr2 (466-573)||(21812937-21813044)
chr2 (419-466)||(5913032-5913079)
chr2 (467-574)||(18561064-18561171)
chr2 (424-562)||(26352569-26352705)
chr2 (291-397)||(35306232-35306334)
chr2 (337-414)||(11457939-11458016)
chr2 (391-428)||(35306171-35306208)
chr2 (341-426)||(40083049-40083136)
chr2 (338-397)||(12599166-12599225)
chr2 (514-548)||(41311445-41311479)
chr2 (165-194)||(40364017-40364046)
[»] chr5 (22 HSPs)
chr5 (291-562)||(29230955-29231224)
chr5 (292-539)||(32076413-32076659)
chr5 (292-548)||(3387271-3387525)
chr5 (341-562)||(2627881-2628110)
chr5 (341-535)||(26564959-26565155)
chr5 (341-535)||(31113920-31114115)
chr5 (337-562)||(5836486-5836708)
chr5 (362-562)||(31210809-31211006)
chr5 (341-562)||(34510818-34511039)
chr5 (337-465)||(19099969-19100097)
chr5 (291-538)||(39935616-39935858)
chr5 (341-514)||(8229316-8229489)
chr5 (354-562)||(7057079-7057285)
chr5 (391-562)||(13407235-13407406)
chr5 (346-562)||(16756004-16756222)
chr5 (425-562)||(27925536-27925673)
chr5 (341-469)||(34764588-34764716)
chr5 (343-548)||(41368597-41368806)
chr5 (354-409)||(27925672-27925727)
chr5 (341-472)||(29674927-29675060)
chr5 (518-562)||(12848542-12848586)
chr5 (466-538)||(28470234-28470306)
[»] chr6 (16 HSPs)
chr6 (302-562)||(32340165-32340422)
chr6 (291-535)||(2032232-2032475)
chr6 (291-562)||(687960-688226)
chr6 (339-561)||(10229422-10229647)
chr6 (341-562)||(2988051-2988274)
chr6 (354-521)||(30928331-30928498)
chr6 (359-562)||(8485919-8486123)
chr6 (342-541)||(22053883-22054080)
chr6 (337-562)||(12311945-12312170)
chr6 (341-490)||(7434868-7435019)
chr6 (337-485)||(12283640-12283790)
chr6 (292-408)||(22297248-22297361)
chr6 (403-469)||(10567349-10567415)
chr6 (460-535)||(22297370-22297444)
chr6 (424-535)||(6724483-6724595)
chr6 (470-561)||(26546168-26546259)
[»] chr8 (22 HSPs)
chr8 (291-535)||(11789251-11789492)
chr8 (291-562)||(25429998-25430269)
chr8 (291-562)||(18928436-18928707)
chr8 (291-562)||(6166410-6166679)
chr8 (291-562)||(24728435-24728701)
chr8 (291-535)||(24888644-24888887)
chr8 (341-562)||(32855995-32856217)
chr8 (359-535)||(23877333-23877511)
chr8 (342-535)||(9409936-9410127)
chr8 (341-465)||(17748796-17748922)
chr8 (337-559)||(11990725-11990947)
chr8 (416-551)||(12006702-12006836)
chr8 (337-538)||(31431306-31431515)
chr8 (391-477)||(11755680-11755766)
chr8 (412-521)||(18320728-18320836)
chr8 (434-562)||(13003341-13003466)
chr8 (443-562)||(17748925-17749045)
chr8 (420-559)||(9136732-9136871)
chr8 (424-562)||(14180023-14180161)
chr8 (466-550)||(26079423-26079507)
chr8 (455-535)||(37231779-37231859)
chr8 (496-543)||(43101005-43101052)
[»] chr3 (25 HSPs)
chr3 (354-562)||(27163966-27164173)
chr3 (341-535)||(45472603-45472797)
chr3 (341-552)||(38489651-38489861)
chr3 (291-559)||(29324060-29324329)
chr3 (291-548)||(46979230-46979485)
chr3 (337-562)||(40614798-40615023)
chr3 (341-572)||(36504788-36505020)
chr3 (391-562)||(52204100-52204271)
chr3 (291-519)||(7629074-7629299)
chr3 (354-565)||(20178974-20179179)
chr3 (361-562)||(52695505-52695709)
chr3 (365-544)||(32835231-32835414)
chr3 (337-562)||(20369162-20369392)
chr3 (341-562)||(39614969-39615184)
chr3 (403-562)||(20619238-20619397)
chr3 (425-544)||(35296420-35296536)
chr3 (419-513)||(52203963-52204057)
chr3 (292-423)||(51240854-51240983)
chr3 (496-562)||(51241345-51241411)
chr3 (341-443)||(53530625-53530728)
chr3 (424-535)||(24611468-24611579)
chr3 (354-409)||(35296535-35296590)
chr3 (341-387)||(17063888-17063934)
chr3 (469-557)||(35941851-35941939)
chr3 (424-560)||(1341681-1341819)
[»] chr1 (24 HSPs)
chr1 (341-561)||(13558459-13558682)
chr1 (291-535)||(17116254-17116495)
chr1 (337-574)||(50726616-50726854)
chr1 (341-562)||(14286995-14287218)
chr1 (291-559)||(38682793-38683065)
chr1 (302-562)||(4966660-4966919)
chr1 (302-562)||(4972963-4973228)
chr1 (367-562)||(31513568-31513764)
chr1 (341-562)||(11767567-11767792)
chr1 (354-535)||(40693934-40694116)
chr1 (291-477)||(25294513-25294696)
chr1 (302-477)||(40032694-40032869)
chr1 (337-562)||(16122764-16122991)
chr1 (291-535)||(41827685-41827919)
chr1 (338-542)||(270930-271135)
chr1 (455-562)||(10443542-10443649)
chr1 (291-408)||(13643903-13644017)
chr1 (337-485)||(51898854-51899003)
chr1 (460-558)||(13643796-13643894)
chr1 (391-535)||(46594201-46594345)
chr1 (354-537)||(30902299-30902485)
chr1 (455-562)||(29488218-29488325)
chr1 (391-535)||(50461181-50461326)
chr1 (501-535)||(33644921-33644955)
[»] chr4 (27 HSPs)
chr4 (291-562)||(19721584-19721853)
chr4 (358-562)||(53586377-53586584)
chr4 (291-520)||(2295393-2295619)
chr4 (295-562)||(53018446-53018711)
chr4 (337-562)||(45773985-45774208)
chr4 (291-562)||(27675415-27675689)
chr4 (291-535)||(35103391-35103632)
chr4 (337-562)||(15476666-15476892)
chr4 (341-535)||(6008209-6008403)
chr4 (337-548)||(44987256-44987468)
chr4 (337-543)||(4775787-4775994)
chr4 (398-562)||(10037845-10038009)
chr4 (291-560)||(40217537-40217808)
chr4 (341-556)||(28101934-28102147)
chr4 (341-475)||(1052368-1052505)
chr4 (354-562)||(24917513-24917712)
chr4 (422-562)||(47922951-47923093)
chr4 (339-543)||(35823518-35823714)
chr4 (337-477)||(7208441-7208583)
chr4 (305-432)||(2242773-2242899)
chr4 (337-435)||(25059457-25059558)
chr4 (500-562)||(24913828-24913890)
chr4 (471-571)||(2242914-2243015)
chr4 (369-559)||(21619539-21619729)
chr4 (466-535)||(45661842-45661911)
chr4 (470-562)||(53014846-53014935)
chr4 (466-562)||(4110239-4110334)
[»] scaffold0565 (1 HSPs)
scaffold0565 (305-562)||(7879-8134)
[»] scaffold0495 (1 HSPs)
scaffold0495 (339-561)||(6137-6362)
[»] scaffold0581 (1 HSPs)
scaffold0581 (501-561)||(10046-10106)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 294 - 562
Target Start/End: Original strand, 3751374 - 3751642
Alignment:
Q  294 aaccataatatattttcatat--gttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||   |||||||  ||| |||||||||||||| |||||||||||||||||||||||    
T  3751374 aaccatattatattttcatatatgttaggaaattgagagaagcatc---attaaaaacactcaacataaattttatttaatgttgattaactgaatcacc 3751470  T
Q  392 tctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctac 491  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3751471 tctctcgttaccttcattcacaagaagtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctac 3751570  T
Q  492 taagtttttacaacattgtctcac-ttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||| ||||||| |||||||| |||||||||    
T  3751571 taagttttcacaacattgtctcactttttttaccctgcatcttttttaagatatgtatatgtgaagtatctt 3751642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 47843647 - 47843913
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| ||  |||||| ||||||   |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  47843647 ataaaccatattatattttcatatgttgggatatcaagagaaacatcat---taaaagaactcaacacaaattttatctaatgttgattaactgaatcac 47843743  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    || ||||    ||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47843744 ctatctct---ccttcatccacaagaagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctcta 47843840  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    || ||||||||||||||||||| |||||||||||||||||| ||||||| |||||| ||| || |||||||||    
T  47843841 ctgagtttttacaacattgtctaacttttttacccttcatctttttctaggatacgcatacgtgaagtatctt 47843913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 337 - 562
Target Start/End: Original strand, 45648144 - 45648370
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||||| || | |||||||||||||||||||||||||||||||| || |||| ||  ||||| |||||||||||||||||||||||||||    
T  45648144 catcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacgtccctcgctatgttcatccacaagaagtataattttaagtggttc 45648243  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-tttt 535  Q
    | |||||||||||| |||||||||||||||||||||||||| ||||||||| || | | |||||||||||||||||||||||||||| | ||||| ||||    
T  45648244 accgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttactcctcatcttttt 45648343  T
Q  536 ctaagatacgtatatgttaagtatctt 562  Q
    ||| ||||||||| ||| |||||||||    
T  45648344 ctaggatacgtatctgtgaagtatctt 45648370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 346 - 558
Target Start/End: Complemental strand, 40836583 - 40836368
Alignment:
Q  346 aagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgaga 443  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||||||||||||    
T  40836583 aagaacttaacacaaattttatcgaatgttgattaactgaatcacctctctctcgttaccttcatccataagaagtataattttaagtggttcatcgaga 40836484  T
Q  444 aacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagat 542  Q
    ||||||| || ||||||||||||||||||||||| |||| ||||||||||  | |||||||| ||||||||||||||||| | ||||| ||||||| |||    
T  40836483 aacaattctagtgatgcatatctaaaattgaatcatatagatctctactagatgtttacaacgttgtctcacttttttactcctcatctttttctatgat 40836384  T
Q  543 acgtatatgttaagta 558  Q
    |||||| ||| |||||    
T  40836383 acgtatctgtgaagta 40836368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 42040334 - 42040576
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    ||||| |||| || ||||||||||||| ||| |||||||||| |||||    |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  42040334 ataaagcatattacattttcatatgttgggatattgagagaaacatcaa---taaaagaactcaacacaaattttatctaatgttgattaactgaatcac 42040430  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| | | ||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||| ||    
T  42040431 atctctcgatgcgttcatccacaagaagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctata 42040530  T
Q  491 ctaagtttttacaacattgtctcac-ttttttacccttcatctttt 535  Q
     | | |||||||||||||||||||| |||||||| |||||||||||    
T  42040531 atgaatttttacaacattgtctcactttttttactcttcatctttt 42040576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 341 - 535
Target Start/End: Original strand, 43495674 - 43495872
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcac----ctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    ||||||||||||||||  ||||||||||||||||| ||||| ||||||||    |||||||||||||||||||||||||| |||||||||||||||||||    
T  43495674 attaaaagaacttaactcaaattttatctaatgttaattaaatgaatcactcacctctctcgttaccttcattcacaagatgtataattttaagtggttc 43495773  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||   | ||||||| |||||||||||||||||| ||||| |||||    
T  43495774 atcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctctactggatgtttacaagattgtctcacttttttactcttcacctttt 43495872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 359 - 562
Target Start/End: Complemental strand, 48153213 - 48153007
Alignment:
Q  359 aaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattg 456  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||    
T  48153213 aaattttatctaatgttgattaactgaatcacctctctctcgttacattcatccacaagaagtataatttcaagtggttcatcgagaaacaattctagtg 48153114  T
Q  457 atgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaa 555  Q
    |||||| |||||||||||||| |||||||||||||  | | ||||||||||| |||||||||||||  ||||||| ||||||| ||||||||||||| ||    
T  48153113 atgcatgtctaaaattgaatcgtatacatctctacggaatgtttacaacattttctcacttttttattcttcatctttttctaggatacgtatatgtgaa 48153014  T
Q  556 gtatctt 562  Q
     ||||||    
T  48153013 atatctt 48153007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 341 - 562
Target Start/End: Complemental strand, 45492368 - 45492134
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcg--------ttaccttcattcacaagaagtataattttaagtg 432  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||    
T  45492368 attaaaagaactcaacacatattttatctaatgttgattaactgaatcacctctctctctctctcattaccttcatccacaagaagtataattttaagtg 45492269  T
Q  433 gttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttttta----cccttc 528  Q
     ||||  | |||||||||  | | ||||||||||||||||||||| ||||| ||||| || | |||||||||||||||||||||||||||    ||||||    
T  45492268 attcactgtgaaacaattcgactaatgcatatctaaaattgaatcatatacgtctctcctgaatttttacaacattgtctcacttttttaatttcccttc 45492169  T
Q  529 atc-ttttctaagatacgtatatgttaagtatctt 562  Q
    ||| ||||||| ||||| ||||||  |||||||||    
T  45492168 atctttttctaggatacatatatgcgaagtatctt 45492134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 297 - 520
Target Start/End: Original strand, 25310891 - 25311101
Alignment:
Q  297 cataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctct 396  Q
    |||| |||||||||||||||| ||| ||||||||||||||| |   |||||||||| |||| |||||||||||||||||||||| || |||    | | |    
T  25310891 catattatattttcatatgttgggatattgagagaagcatcgt---taaaagaactcaacacaaattttatctaatgttgattagctaaatt---ttttt 25310984  T
Q  397 cgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagt 496  Q
    | |||||||||| |||||||||||||||||||||||||||||| |||||||||| || || ||||||| ||||||| |||| |||||||||||||         
T  25310985 cattaccttcatccacaagaagtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctctac----- 25311079  T
Q  497 ttttacaacattgtctcacttttt 520  Q
      ||||||||||||||||||||||    
T  25311080 --ttacaacattgtctcacttttt 25311101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 562
Target Start/End: Original strand, 25482527 - 25482763
Alignment:
Q  338 atcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttca 437  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||  |||| ||||| |  |||| ||||||||| ||||    
T  25482527 atcattaaaagaactcaacatatattttatctaatgttgattaactgagtcacctctctcgctacgatcatccacaaca--tatatttttaagtgtttca 25482624  T
Q  438 tcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctact---------aag----tttttacaacattgtctcacttttttacc 524  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||| || |         |||    |||||||||||||||||||||||||||      
T  25482625 tcgaaaaacaattatattgatgcatatctaaaattgaatcatatacatctataatgaatttttaaagcatatttttacaacattgtctcacttttttaat 25482724  T
Q  525 cttcat-cttttctaagatacgtatatgttaagtatctt 562  Q
     ||||| ||||||||| |||||||| ||| |||||||||    
T  25482725 tttcatccttttctaaaatacgtatttgtgaagtatctt 25482763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 292 - 543
Target Start/End: Complemental strand, 42509414 - 42509175
Alignment:
Q  292 taaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    ||||||||| |||| ||||||||||| ||| || ||||||||||||||   |||||||||| |||| ||||||||||||||||||||||| ||||  ||     
T  42509414 taaaccatattatactttcatatgttgggatatcgagagaagcatcat---taaaagaactcaacacaaattttatctaatgttgattaattgaa--aca 42509320  T
Q  392 tctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctac 491  Q
    |||||| |||||||||| || ||||||  |||||||||  ||||||||   ||  |||| || | |||||| |||||||||||||  |||| || | |||    
T  42509319 tctctctttaccttcatccataagaag--taattttaaacggttcatc---aataaattctactaatgcatgtctaaaattgaat--tatatatttttac 42509227  T
Q  492 taagtttttacaacattgtctcacttttttacccttcatcttttctaagata 543  Q
    | | |||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  42509226 tgaatttttacaacattgtctcacttttttacccatcatcttgtctaggata 42509175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 562
Target Start/End: Complemental strand, 22201239 - 22201077
Alignment:
Q  399 ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagttt 498  Q
    ||||||||||| | |||||| |||||||||||||||| |||||||||||||| ||  ||| || |||||||||| || | |||||||||| ||| | |||    
T  22201239 ttaccttcattaataagaagcataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaattt 22201141  T
Q  499 ttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    ||| |||||||||||| ||||||||| ||||||||||||| ||||||||  ||| |||||||||    
T  22201140 ttagaacattgtctcatttttttaccattcatcttttctatgatacgtacctgtgaagtatctt 22201077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 562
Target Start/End: Original strand, 22236582 - 22236744
Alignment:
Q  399 ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagttt 498  Q
    ||||||||||| | |||||| |||||||||||||||| |||||||||||||| ||  ||| || |||||||||| || | |||||||||| ||| | |||    
T  22236582 ttaccttcattaataagaagcataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaattt 22236680  T
Q  499 ttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    ||| |||||||||||| ||||||||| ||||||||||||| ||||||||  ||| |||||||||    
T  22236681 ttagaacattgtctcatttttttaccattcatcttttctatgatacgtacctgtgaagtatctt 22236744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 2185624 - 2185884
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    ||||| |||| |||||||||||||||| ||| || || ||||| || ||   |||||||||| |||| |||||||||| |||||||||||| |||||||     
T  2185624 ataaatcatattatattttcatatgtttggatatcgacagaagaataat---taaaagaactcaacacaaattttatcaaatgttgattaaatgaatcat 2185720  T
Q  391 ctctctcg----ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatc 486  Q
    |||||||     |||||||||| ||||||||||||||||||              ||||||||| || | ||||||||||||||||||||| |||| |||    
T  2185721 ctctctccctcattaccttcatccacaagaagtataattttt-------------gaaacaattctactaatgcatatctaaaattgaatcatatatatc 2185807  T
Q  487 tctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    ||| || | ||||||||||||||||||  ||||||||| || ||| ||||||| ||||| ||||||| |||||||||    
T  2185808 tctccttaatttttacaacattgtctcgtttttttaccttttatctttttctaggatacatatatgtgaagtatctt 2185884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 425 - 562
Target Start/End: Complemental strand, 34471874 - 34471737
Alignment:
Q  425 tttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacc 524  Q
    ||||||||| ||||| ||||||| || ||  |||||||||||||||||||||  |||||||||||||| | ||| ||||||||||| ||||||||||||     
T  34471874 tttaagtggctcatcaagaaacagttctagagatgcatatctaaaattgaattatatacatctctactgaatttctacaacattgtgtcacttttttaca 34471775  T
Q  525 cttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||| ||| ||| ||||||||||||| |||||||||    
T  34471774 cttcatatttcctaggatacgtatatgtgaagtatctt 34471737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 465
Target Start/End: Complemental strand, 45805037 - 45804918
Alignment:
Q  346 aagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaa 445  Q
    ||||||| |||| ||||||||||| ||| ||||||| ||||||| |||||||||||||||||| ||| | |||||||| |||||||||||||||  ||||    
T  45805037 aagaactcaacacaaattttatctgatgatgattaattgaatcatctctctcgttaccttcatccacgaaaagtataaatttaagtggttcatcaggaaa 45804938  T
Q  446 caattttattgatgcatatc 465  Q
    ||||| || |||||||||||    
T  45804937 caattctaatgatgcatatc 45804918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 3751206 - 3751276
Alignment:
Q  124 ttaggatacgatataactaggatacattaacaaatattttatatatgtacgtaaaatacttgaagaaaata 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3751206 ttaggatacgatacaactaggatacattaacaaatattttatatatgtatgtaaaatacttgaagaaaata 3751276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 362 - 487
Target Start/End: Complemental strand, 7858065 - 7857938
Alignment:
Q  362 ttttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatg 459  Q
    |||||||||||||||||||| |||||| ||||||||  |||||| |||| ||||| || |||| ||||||||||||||  ||||||||||| || || |     
T  7858065 ttttatctaatgttgattaattgaatctcctctctcttgttaccatcatccacaataaatatatttttaagtggttcaatgagaaacaattctactgttt 7857966  T
Q  460 catatctaaaattgaatcctatacatct 487  Q
    |||||||||||||||||| |||||||||    
T  7857965 catatctaaaattgaatcatatacatct 7857938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 22543398 - 22543506
Alignment:
Q  452 tattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatat 550  Q
    |||||||||| ||||||||||||||| |||||||||| ||| | | ||||||||||  |||||| ||||||||  ||||| |||||||||||| ||||||    
T  22543398 tattgatgcacatctaaaattgaatcatatacatctcaactgaatgtttacaacat--tctcac-tttttacctgtcatctttttctaagatatgtatat 22543494  T
Q  551 gttaagtatctt 562  Q
    || |||||||||    
T  22543495 gtgaagtatctt 22543506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 22542930 - 22542995
Alignment:
Q  385 aatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatt 450  Q
    ||||||||||||||||| ||||||  | ||||| |||||||||||||||||||| |||||||||||    
T  22542930 aatcacctctctcgttatcttcatctataagaaatataattttaagtggttcatggagaaacaatt 22542995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 3751114 - 3751161
Alignment:
Q  44 ttgacaaagattaattactaactatttatgtgatttgaaattacgaag 91  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  3751114 ttgacaaagattaattactatctatttatgtgatttgaaattatgaag 3751161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 43728171 - 43728123
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcat 339  Q
    |||||||||| |||||||||||||||| ||| || ||||||||||||||    
T  43728171 ataaaccatattatattttcatatgttgggatatcgagagaagcatcat 43728123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Original strand, 22542830 - 22542861
Alignment:
Q  369 taatgttgattaactgaatcacctctctcgtt 400  Q
    ||||||||||||||||||||||||||||||||    
T  22542830 taatgttgattaactgaatcacctctctcgtt 22542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 506
Target Start/End: Original strand, 44798121 - 44798285
Alignment:
Q  343 taaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtat-aattttaagtggttcatcga 441  Q
    |||||||||| || | ||| ||||| ||| ||||||| | ||||||  |||||||||||| || || ||| | ||  || |||||||| ||||| || ||    
T  44798121 taaaagaactcaaaacaaagtttatttaacgttgattgattgaatcttctctctcgttacttttatccaccaaaaacataaattttaattggttaattga 44798220  T
Q  442 gaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaaca 506  Q
    |||| |||| || |||| ||||||| |||||||| |  ||||||||| ||| | |||| ||||||    
T  44798221 gaaataattatagtgattcatatcttaaattgaaacacatacatctccactgaattttcacaaca 44798285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 6e-88; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 291 - 560
Target Start/End: Complemental strand, 41324133 - 41323867
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| || |||||||| |||||   |||||||||| |||| ||||| ||||||||||| || |||||||||||    
T  41324133 ataaaccatattatattttcatatgttgggatatcgagagaagtatcat---taaaagaactcaacacaaattgtatctaatgtt-ataaactgaatcac 41324038  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  41324037 ctctctcgttaccttcatccacaagaagtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctcta 41323938  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatc 560  Q
    || | ||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||| |||||||    
T  41323937 ctgaatttttacaacattgtctcacttttttaccgttcatctttttctaggatacatatatgtgaagtatc 41323867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 291 - 560
Target Start/End: Original strand, 42794651 - 42794918
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||| ||| |||||||||| ||||   |||||||||||| |||| ||||||||||||||||||||||||| |||||     
T  42794651 ataaaccatattacattttcatatgttgggatattgagagaaacatc---attaaaagaactcaacacaaattttatctaatgttgattaactaaatcat 42794747  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     | ||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||  |||||||| ||    
T  42794748 atttctcgctacgttcatccacaataagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctata 42794847  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatc 560  Q
     | | |||||||||||||||||||||||||||| ||||||| ||||||| ||||||| | ||| |||||||    
T  42794848 atgaatttttacaacattgtctcacttttttactcttcatctttttctaggatacgtgtttgtgaagtatc 42794918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 348 - 562
Target Start/End: Complemental strand, 7018028 - 7017811
Alignment:
Q  348 gaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgagaaa 445  Q
    ||||| |||| |||||||||||||||||||||||| |||| |||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  7018028 gaactcaacacaaattttatctaatgttgattaaccgaattacctctctctcgttaccttcatccacaagaagtataattttaagtggtttatcgagaaa 7017929  T
Q  446 caattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatac 544  Q
    ||||| ||   ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| || ||    
T  7017928 caattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcacttttttacccttcatctttttctaggaaac 7017829  T
Q  545 gtatatgttaagtatctt 562  Q
     ||||||| |||||||||    
T  7017828 atatatgtgaagtatctt 7017811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 338 - 534
Target Start/End: Original strand, 37272830 - 37273027
Alignment:
Q  338 atcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtggtt 435  Q
    ||||||||||||||| |||||||||||| |||||  ||||| |||| |||||||||  ||||||||||||||| ||| ||||||||||||||||||||||    
T  37272830 atcattaaaagaactcaacataaattttgtctaagattgat-aactaaatcacctccctctcgttaccttcatccacgagaagtataattttaagtggtt 37272928  T
Q  436 catcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttt 534  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||    
T  37272929 catcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttacttttttacctttcatcttt 37273027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 30485838 - 30485592
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||| ||| |||||||||||||||| ||| || || |||| ||||||   |||||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  30485838 ataaactatattatattttcatatgttgggatatagaaagaaacatcat---taaaagaactcaacacaaactttatctaatgttgattaattgaatcac 30485742  T
Q  391 ct--ctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
    ||  ||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||| |  | |||||||    
T  30485741 ctttctctcattaccttcatccacaagaagtataaatttaagtggttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctc 30485642  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatcttttcta 538  Q
    |||| | |||||| | |||| ||||||||||||||| |||||||||||||    
T  30485641 tactgaatttttagagcattatctcacttttttacctttcatcttttcta 30485592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 362 - 562
Target Start/End: Original strand, 38221559 - 38221760
Alignment:
Q  362 ttttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgca 461  Q
    ||||||||||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||||||| |||||| |||||||||| || |||||||    
T  38221559 ttttatctaatgttgatcaattgaatcacctctctcgttacctttgtccacaagaagtataattttaagtgattcatcaagaaacaattctagtgatgca 38221658  T
Q  462 tatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatc 560  Q
    |||| ||||||||||| |||||||||||| | | | ||||||||||||||||||| |||||| ||||||| ||||||| ||||| ||||||| |||||||    
T  38221659 tatccaaaattgaatcatatacatctctattgaatgtttacaacattgtctcactcttttactcttcatctttttctaggatacatatatgtgaagtatc 38221758  T
Q  561 tt 562  Q
    ||    
T  38221759 tt 38221760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 364 - 562
Target Start/End: Original strand, 11562673 - 11562869
Alignment:
Q  364 ttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcata 463  Q
    ||||| |||||||||||| |||||||||||||||||||  |||||  ||||||||||||||||||||||||| |||||||||||||| |  |||| ||||    
T  11562673 ttatccaatgttgattaattgaatcacctctctcgttattttcatctacaagaagtataattttaagtggtttatcgagaaacaattgt--tgattcata 11562770  T
Q  464 tctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    || ||||||||||| |||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||   |||||||| ||| |||||||||    
T  11562771 tccaaaattgaatcatatatatctctactgaatttctacaacattgtctcacttttttacccttcatcttttctcgaatacgtatttgtgaagtatctt 11562869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 341 - 562
Target Start/End: Complemental strand, 17328911 - 17328683
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc------gttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||      ||||||||||| |||||||||||||| ||||||||||    
T  17328911 attaaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctctttcgttaccttcatccacaagaagtataactttaagtggt 17328812  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttt 534  Q
    ||  || |||||||||  | | ||||||||||||||||||||| ||||||||||| || | |||||||||| ||||||||||||| ||| ||||||||||    
T  17328811 tccccgtgaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaatttttacaaccttgtctcacttttctacgcttcatcttt 17328712  T
Q  535 t-ctaagatacgtatatgttaagtatctt 562  Q
    | ||| ||||| ||||||| |||||||||    
T  17328711 tcctaggatacatatatgtgaagtatctt 17328683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 354 - 531
Target Start/End: Complemental strand, 36467394 - 36467215
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattt 451  Q
    |||| |||||||||||| |||||||||| ||||||||  ||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  36467394 aacacaaattttatctattgttgattaattgaatcacatctctctcattaccttcatccacaagaatcataattttaagtggttcatcgagaaacaattt 36467295  T
Q  452 tattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc 531  Q
    || | ||||||||||||||||||||| ||||||| || ||| | ||||||||||||||||||||||| |||||| |||||    
T  36467294 tacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcactttcttacccgtcatc 36467215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 291 - 510
Target Start/End: Original strand, 30382685 - 30382903
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| || ||||||| ||||||   |||||||| | || | ||||||||||||||||||||||||||||||||    
T  30382685 ataaaccatattatattttcatatgttgggatatcgagagaaacatcat---taaaagaattcaatacaaattttatctaatgttgattaactgaatcac 30382781  T
Q  391 --ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
      ||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||||   || |||||||    
T  30382782 atctctctcattacattcatccacaagaagtataaatttaagtggttcatcgagaaacaattctaatgatgtatatctaaaagtgaacaatacacatctc 30382881  T
Q  489 tactaagtttttacaacattgt 510  Q
    || | | |||||||||||||||    
T  30382882 taatgaatttttacaacattgt 30382903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 484
Target Start/End: Complemental strand, 40498821 - 40498676
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||  |||| |||||| || ||||||||||||||||||||||||||    
T  40498821 attaaaagaactcaacacaaattttatctaatgttgattaactgaatcagctctctctcgttatcttcatccaaaagaagtataattttaagtggttcat 40498722  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctataca 484  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  40498721 cgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 420 - 562
Target Start/End: Complemental strand, 35298555 - 35298411
Alignment:
Q  420 ataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttt 519  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||  |||||||||||||| | ||||||||||||||||||||||||    
T  35298555 ataattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcactttt 35298456  T
Q  520 ttacccttcatc--ttttctaagatacgtatatgttaagtatctt 562  Q
    ||||| || |||  |||||||  |||||||||||| |||||||||    
T  35298455 ttaccttttatcttttttctagaatacgtatatgtgaagtatctt 35298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 342 - 541
Target Start/End: Complemental strand, 44364465 - 44364268
Alignment:
Q  342 ttaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcga 441  Q
    ||||||||||| |||||  |||| |||||| ||||||||| ||||| | ||||||| |||||||||| || | ||||||||| |||| |||||||||  |    
T  44364465 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatctctctcattaccttcatccagaggaagtataaattta-gtggttcatt-a 44364368  T
Q  442 gaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaaga 541  Q
    |||||||||  | |||||| |||||||||||||| | || ||||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||    
T  44364367 gaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaaga 44364268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 343 - 562
Target Start/End: Original strand, 16496719 - 16496941
Alignment:
Q  343 taaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgt--taccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||  |||| || |||| ||||||||||||||  |||||| | |||||| |  | | ||||| ||||| || |||| |||||||||||||||||    
T  16496719 taaaagaacagaacacaagttttgtctaatgttgattagttgaatctcatctctcttattgcattcatccacaaaaaatatacttttaagtggttcatcg 16496818  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcac-ttttttacccttcatcttttctaa 539  Q
    ||||||||||||| |||| || ||||||||||||||| |||||||||  | | | |||| ||||||||||| ||| |||||||| ||| ||||||||||     
T  16496819 agaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcacaacattgtcccactttttttactctttatcttttctag 16496918  T
Q  540 gatacgtatatgttaagtatctt 562  Q
    ||||| |||||||||||||||||    
T  16496919 gatacatatatgttaagtatctt 16496941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 341 - 521
Target Start/End: Complemental strand, 40364009 - 40363830
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||||| |||| | |||||||||||| | |||||| |||||||||| ||||||||| ||| ||||||| |||||||||||||| |  |||||||    
T  40364009 attaaaagaactcaacacacattttatctaatat-gattaattgaatcacctatctcgttacattccttcacaaaaagtataattttaaattattcatcg 40363911  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttttt 521  Q
    | |||||||  || ||||   |||||||||||||||| || |||||| |||| | | ||||||||||||||||||||||||    
T  40363910 acaaacaatcatagtgatctgtatctaaaattgaatcatacacatctttactgaatgtttacaacattgtctcactttttt 40363830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 383 - 538
Target Start/End: Original strand, 38558613 - 38558768
Alignment:
Q  383 tgaatcacctctct--cgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatccta 480  Q
    |||||| |||||||  |||||||||||| |||||||||| ||||||||||||||||| |||||||||||| || ||||  |||||||||||||||| | |    
T  38558613 tgaatctcctctcttgcgttaccttcatccacaagaagtgtaattttaagtggttca-cgagaaacaattatactgatatatatctaaaattgaat-cga 38558710  T
Q  481 tacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttcta 538  Q
    || ||||  | ||| |||| |||||  ||||||||||||||||| |||||||||||||    
T  38558711 tatatcttcaataaattttcacaactctgtctcacttttttacctttcatcttttcta 38558768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 291 - 444
Target Start/End: Complemental strand, 38140989 - 38140833
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatca----ttaaaagaacttaacataaattttatctaatgttgattaactgaa 386  Q
    |||||||||| || ||||||||||||| ||| || |||| ||  ||||| |    ||||||||||| |||| ||| ||||||||||||||||||||||||    
T  38140989 ataaaccatattacattttcatatgttgggatatcgagaaaaatatcattaaaatttaaaagaactcaacacaaaatttatctaatgttgattaactgaa 38140890  T
Q  387 tcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaa 444  Q
    |||||||||||| ||| ||||| || ||||||||| || ||||||||||||| |||||    
T  38140889 tcacctctctcgctacgttcatccataagaagtat-atattaagtggttcattgagaa 38140833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 562
Target Start/End: Complemental strand, 38140690 - 38140558
Alignment:
Q  434 ttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatc----tctactaagtttttacaacattgtctcacttttttacccttca 529  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    | || | | || ||||||||||||||||| ||||||| |||||    
T  38140690 ttcatcgagaa-caattatattgatgcatatctaaaattgaatcatatacatcaatctataatgaattcttacaacattgtctcacatttttactcttca 38140592  T
Q  530 tcttttc-taagatacgtatatgttaagtatctt 562  Q
    ||||||| || ||||||||||||| |||||||||    
T  38140591 tcttttcttaggatacgtatatgtgaagtatctt 38140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 560
Target Start/End: Complemental strand, 2789025 - 2788882
Alignment:
Q  417 agtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcact 516  Q
    ||||||||||||| |||||  || ||||||||||||| | |||||||| |||||||||||  ||||||| || | |||  ||| |||| |||||||||||    
T  2789025 agtataattttaaatggtttttccagaaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcact 2788926  T
Q  517 tttttacccttcatcttttctaagatacgtatatgttaagtatc 560  Q
    |||||| | ||||||||||||| |||| |||| ||| |||||||    
T  2788925 tttttaacattcatcttttctatgatatgtatgtgtgaagtatc 2788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 40498664 - 40498557
Alignment:
Q  455 tgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt-ctaagatacgtatatgtt 553  Q
    ||||||||||| ||| ||||||| |||||||||||||| | | |||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| |     
T  40498664 tgatgcatatcgaaa-ttgaatcgtatacatctctactgaatgtttacaacattgtctcacttttatactcttcatcttttcctaggatacgtatatatg 40498566  T
Q  554 aagtatctt 562  Q
    |||||||||    
T  40498565 aagtatctt 40498557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 474 - 562
Target Start/End: Complemental strand, 35428829 - 35428741
Alignment:
Q  474 aatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||| |||||||||| ||| | |||| | | ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  35428829 aatcatatacatctccactgaattttcagatcattgtctcacttttttacccttcatcttttgtaagatacgtatgtgtgaagtatctt 35428741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 424 - 535
Target Start/End: Complemental strand, 3353228 - 3353117
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac 523  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| |||||||||| ||||||| || | ||| |||| ||||||| |||||||||||| ||    
T  3353228 ttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatagtctcactttttgac 3353129  T
Q  524 ccttcatctttt 535  Q
     |||||| ||||    
T  3353128 tcttcatttttt 3353117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 466 - 573
Target Start/End: Complemental strand, 21813044 - 21812937
Alignment:
Q  466 taaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctttgt 565  Q
    |||||||||||| ||| ||| || | | | ||| |||||||||||||||||||||||| ||||||||||| | |||||| ||| | | ||||||||||||    
T  21813044 taaaattgaatcatattcatttccattgaatttatacaacattgtctcacttttttactcttcatcttttatgagatacatatctttgaagtatctttgt 21812945  T
Q  566 ctatctgt 573  Q
     |||||||    
T  21812944 gtatctgt 21812937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 419 - 466
Target Start/End: Complemental strand, 5913079 - 5913032
Alignment:
Q  419 tataattttaagtggttcatcgagaaacaattttattgatgcatatct 466  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  5913079 tataattttaagtggtttatcaagaaacaattttattaatgcatatct 5913032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 574
Target Start/End: Complemental strand, 18561171 - 18561064
Alignment:
Q  467 aaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctttgtc 566  Q
    ||||||||||| ||||||| || ||| | |||| | ||||||||||||||||||||| |||||| |||| || ||||| ||| | | ||||||| ||||     
T  18561171 aaaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttactcttcatgttttataggatacatatctttgaagtatccttgtg 18561072  T
Q  567 tatctgtg 574  Q
    ||| ||||    
T  18561071 tatatgtg 18561064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 26352705 - 26352569
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac 523  Q
    |||||| ||||| |||||||||||||| || |||  ||||||| |||||||||| || ||||||| | | | |||| |||| |  | |||||||||||||    
T  26352705 ttttaattggttaatcgagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaacagactcacttttttac 26352606  T
Q  524 ccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    | ||||  |||| || ||||||| ||||| |||||||||    
T  26352605 ctttca--ttttttaggatacgtttatgtgaagtatctt 26352569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 35306334 - 35306232
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||  ||| || |||||||  || ||| ||||| |||||  ||| ||||||||||||||||||||||||| |||||     
T  35306334 ataaaccatattatattttcatatgtagggatatcgagagaa--at-atcgttaaa-gaactccacacaaattttatctaatgttgattaactaaatcat 35306239  T
Q  391 ctctctc 397  Q
    |||||||    
T  35306238 ctctctc 35306232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 11458016 - 11457939
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaa 414  Q
    ||||||||||| |||  |||| ||||||| ||||||||||||||| | ||||  ||||||| |||||||||| |||||    
T  11458016 catcattaaaataacgcaacacaaattttgtctaatgttgattaattaaatcttctctctcattaccttcatccacaa 11457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 35306208 - 35306171
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataatttta 428  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35306208 ctctctcgttaccttcatacacaagaagtataatttta 35306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 40083136 - 40083049
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattt 426  Q
    ||||| |||||| |||| |||||||  |||||||||||||| |||||| ||||  ||||||||||||| |  |||||||||| |||||    
T  40083136 attaacagaactcaacacaaattttgcctaatgttgattaattgaatctcctctatctcgttaccttcctctacaagaagtaaaattt 40083049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 12599225 - 12599166
Alignment:
Q  338 atcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc 397  Q
    ||||||||||||||  |||| |||| || ||||||||||||||| |||||| ||||||||    
T  12599225 atcattaaaagaacacaacacaaatgttgtctaatgttgattaattgaatctcctctctc 12599166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Complemental strand, 41311479 - 41311445
Alignment:
Q  514 acttttttacccttcatcttttctaagatacgtat 548  Q
    ||||||| |||||||||||||||||||||||||||    
T  41311479 actttttcacccttcatcttttctaagatacgtat 41311445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 40364046 - 40364017
Alignment:
Q  165 tatatgtacgtaaaatacttgaagaaaata 194  Q
    ||||||||||||||||||||||||||||||    
T  40364046 tatatgtacgtaaaatacttgaagaaaata 40364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 29230955 - 29231224
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||| ||| |||||||||| ||||   |||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  29230955 ataaaccatattacattttcatatgttgggatattgagagaaacatc---attaaaagaattcaacacaaattttatctaatgttgattaactgaatcac 29231051  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||    
T  29231052 atctctcgctacattcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctata 29231151  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
     | | |||||||||||||||||||||||||||  ||||||| ||||||| ||||||| | ||| |||||||||    
T  29231152 atgaatttttacaacattgtctcacttttttagtcttcatctttttctaggatacgtgtctgtgaagtatctt 29231224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 292 - 539
Target Start/End: Original strand, 32076413 - 32076659
Alignment:
Q  292 taaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    |||||||||  ||||||||||||||| ||| || ||||||| ||||||   |||||||| | |||| ||||||||||||||||||||||| ||||||||     
T  32076413 taaaccatatcatattttcatatgttgggatatcgagagaaacatcat---taaaagaattcaacacaaattttatctaatgttgattaagtgaatcact 32076509  T
Q  392 t--ctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctct 489  Q
    |  ||||||||| ||||||| ||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||   || ||||||||    
T  32076510 tatctctcgttaacttcattgacaagaagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctct 32076609  T
Q  490 actaagtttttacaacattgtctcacttttttacccttcatcttttctaa 539  Q
    ||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  32076610 actgaaattttacaacattgtctcacttttttacccttcatcttttctaa 32076659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 292 - 548
Target Start/End: Complemental strand, 3387525 - 3387271
Alignment:
Q  292 taaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    ||||||| | |||||||||||||||| ||| || ||||||| ||||||   |||||||||| |||| ||||||||||||||||||||||| ||||||||     
T  3387525 taaaccaaattatattttcatatgttgggatatcgagagaaacatcat---taaaagaactcaacacaaattttatctaatgttgattaagtgaatcaca 3387429  T
Q  392 tctctcg-ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    | ||||| ||| ||||||  ||||||||||||| |||||||||||||| ||||||||||| || |||||||||  ||||||||||   || || ||||||    
T  3387428 tatctcgattaacttcatatacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctcta 3387329  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtat 548  Q
    || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3387328 ctgaatttttacaacattgtctcacttttttacccttcatcttttctaggatacgtat 3387271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 341 - 562
Target Start/End: Original strand, 2627881 - 2628110
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctct------cgttaccttcattcacaagaagtataattttaagtggt 434  Q
    ||||||| |||| |||| ||||||||| ||||||||||||| ||||||||||||||      | |||||||||| ||||  |||||||||||||||||||    
T  2627881 attaaaataactcaacacaaattttatttaatgttgattaattgaatcacctctctatctctctttaccttcatccacagaaagtataattttaagtggt 2627980  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc--t 532  Q
    ||||||| |||||||| || | ||||||||||||||||||||| |||||||||||||| | | ||||||||| |||||||||||||||| |||||||  |    
T  2627981 tcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcacttttttactcttcatcttt 2628080  T
Q  533 tttctaagatacgtatatgttaagtatctt 562  Q
    |||||| ||||| ||||||| |||||||||    
T  2628081 tttctaggatacatatatgtgaagtatctt 2628110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 341 - 535
Target Start/End: Complemental strand, 26565155 - 26564959
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||| |||||||||| ||| | |||||||||||||||||||| ||    
T  26565155 attaaaagaactcaacataaattttatctaatattgattaactgaatcacctccctctccttaccttcatccacgataagtataattttaagtggtttat 26565056  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    | |||||||||| || |||| |||||||||||||||||| |||||||  ||| | | | ||||||||||| |||||||||||||| |||||||||||    
T  26565055 caagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcacttttttactcttcatctttt 26564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 341 - 535
Target Start/End: Original strand, 31113920 - 31114115
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttacc-ttcattcacaagaagtataattttaagtggttca 437  Q
    |||||||||| | || | |||||||||||||||||||||||| ||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||    
T  31113920 attaaaagaagtcaaaacaaattttatctaatgttgattaaccgaatcacctctctctcgttacccttcatccacaagaagtataattttaagtggttca 31114019  T
Q  438 tcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
     || |||||||||||| | ||||||||||||||||||||| ||||||||||| || | |||||  || ||||||||||||||||||||||||| ||||    
T  31114020 ccgtgaaacaattttactaatgcatatctaaaattgaatcatatacatctctccttaattttt--aatattgtctcacttttttacccttcatttttt 31114115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 337 - 562
Target Start/End: Complemental strand, 5836708 - 5836486
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||| |||||| |||||||||||||||| || ||  ||   ||||||||||||||||||    
T  5836708 catcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcctctctcgttacctttatacattag---tataattttaagtggttc 5836612  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttc 536  Q
    |||||||||||||| ||  ||| ||||| |||||||||||| |||||||||  ||| | |||| ||||||||||||||| |||  ||||||||| |||||    
T  5836611 atcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaacattgtctcacctttgcacccttcatattttc 5836512  T
Q  537 taagatacgtatatgttaagtatctt 562  Q
    ||  |||||||| | | |||||||||    
T  5836511 tagaatacgtatctctgaagtatctt 5836486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 362 - 562
Target Start/End: Original strand, 31210809 - 31211006
Alignment:
Q  362 ttttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgca 461  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||||| |||||||||||| |||   || || |||||||    
T  31210809 ttttatataatgttgattaattgaatcacctctcttgttaccttcatccataagaaatataattttaggtggttcatcgataaa---ttctactgatgca 31210905  T
Q  462 tatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatct 561  Q
    | | ||||||| |||| ||||||| |||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  31210906 tgtttaaaattaaatcatatacatttctactgaatttttacaacactgtctcatttttttacccttcatattttctaagatacatatctgtgaagtatct 31211005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 341 - 562
Target Start/End: Complemental strand, 34511039 - 34510818
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    ||||||| |||| |||  ||||| ||||| ||||||||||||| |||||||||| || |||| ||||| || ||||||||||||||||||||||||||||    
T  34511039 attaaaataactcaactcaaattctatctcatgttgattaact-aatcacctctttcattactttcatccataagaagtataattttaagtggttcatcg 34510941  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaa 539  Q
    | ||||||| ||| | ||||||||||||| || |||| |||||||||||| | ||| ||||||| ||| |||||||||||||| ||||||| |||||||     
T  34510940 aaaaacaatgttagttatgcatatctaaatttaaatcatatacatctctattgagtgtttacaatattatctcacttttttactcttcatctttttctac 34510841  T
Q  540 gatacgtatatgttaagtatctt 562  Q
    ||||||||| | | |||||||||    
T  34510840 gatacgtatctctgaagtatctt 34510818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 337 - 465
Target Start/End: Original strand, 19099969 - 19100097
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||    
T  19099969 catcattaaaaaaactcaacacaaattttatctaatgttgattaactgaatcacatctctcgttacgttcatccacaagaagtataattttaggtgtttc 19100068  T
Q  437 atcgagaaacaattttattgatgcatatc 465  Q
    |||||||||||||| ||||||||||||||    
T  19100069 atcgagaaacaattatattgatgcatatc 19100097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 39935858 - 39935616
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| | | |||||||||| ||||||   |||||||||  |||| ||||||||||| ||||||||||| || |||||    
T  39935858 ataaaccatattatattttcatatgttggaatattgagagaaacatcat---taaaagaacacaacacaaattttatctgatgttgattaattggatcac 39935762  T
Q  391 ctctctcg--ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
     ||||||   |||||||||| ||| | |||||||| ||||||||||| |||||||||||| | || ||||| ||||||||||||||| |    | |||||    
T  39935761 atctctcagattaccttcatccactaaaagtataaatttaagtggtttatcgagaaacaactctaatgatgtatatctaaaattgaacc----atatctc 39935666  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatcttttcta 538  Q
    || | | ||||||||||||||||||||||||||| | |||||||||||||    
T  39935665 taatgaatttttacaacattgtctcacttttttatctttcatcttttcta 39935616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 341 - 514
Target Start/End: Complemental strand, 8229489 - 8229316
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    ||||||| |||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||  | ||| |||||||| |||||||||| ||||| |    
T  8229489 attaaaaaaactcaacacaaattttatctaatgttgattaaccgaatcacctctcgcattacctttgtccacgagaagtatgattttaagtgattcattg 8229390  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctca 514  Q
    |||||||||| || |||||||||||||||| | |||| |||||||||||| | | | |||||||||||||||||    
T  8229389 agaaacaattctagtgatgcatatctaaaactaaatcatatacatctctattgaatgtttacaacattgtctca 8229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 354 - 562
Target Start/End: Complemental strand, 7057285 - 7057079
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatttta 453  Q
    |||| |||||||||| |||||||||||| |||||||| | | |||||||||||||  |  |||| ||||||||||||| ||||||||||| |||||| ||    
T  7057285 aacacaaattttatccaatgttgattaattgaatcacgtatttcgttaccttcatctattagaaatataattttaagttgttcatcgagacacaattata 7057186  T
Q  454 ttgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgtt 553  Q
     |||| ||||| ||||  |||||| |||||||||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||     
T  7057185 ctgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcact-ttttacccttcat-ttttctaggatacatatatgtg 7057088  T
Q  554 aagtatctt 562  Q
    ||| |||||    
T  7057087 aagcatctt 7057079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 13407235 - 13407406
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    ||||||| ||| || |||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||||  | ||||    
T  13407235 ctctctcattagctccattcataagaagtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatataagtttcta 13407334  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    || | ||| ||||||||||||||| ||||||  ||||||||||||||| ||||||||| ||| | |||||||    
T  13407335 ctgaatttctacaacattgtctcaattttttctccttcatcttttctaggatacgtatttgtgacgtatctt 13407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 346 - 562
Target Start/End: Original strand, 16756004 - 16756222
Alignment:
Q  346 aagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgaga 443  Q
    |||||||||||| |||| |  ||||||||||||||| |||||| | ||||||  ||||||||||| |||||||| ||||||||||||||||  ||||| |    
T  16756004 aagaacttaacacaaatctagtctaatgttgattaattgaatctcttctctcttgttaccttcatccacaagaattataattttaagtggtcaatcgata 16756103  T
Q  444 aacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagata 543  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||   | |  |||  ||||||||||||||||||||  ||||||| ||||||| ||||    
T  16756104 aacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtctcacttttttgtccttcatattttctaggata 16756203  T
Q  544 cgtatatgttaagtatctt 562  Q
    | |||| || || ||||||    
T  16756204 catatacgtaaaatatctt 16756222  T

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Target: chr5; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 425 - 562
Target Start/End: Complemental strand, 27925673 - 27925536
Alignment:
Q  425 tttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacc 524  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||||| || | |||||| || | ||| ||||||||||||||| ||||||||     
T  27925673 tttaagtggttcatcgagaaacaattctactgatgaatatctaaaattgaatcatagatatctctgctgaatttctacaacattgtctcatttttttaca 27925574  T
Q  525 cttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  27925573 cttcatcttttctaggatacgtatatgtgaagtatctt 27925536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 341 - 469
Target Start/End: Original strand, 34764588 - 34764716
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||| ||||||| || ||||||| || ||||||||||||||||||||    
T  34764588 attaaaagaactcaacacaaattttatttaatgttgattaattgaatcacctctctcattacctttatccacaagacgtgtaattttaagtggttcatcg 34764687  T
Q  441 agaaacaattttattgatgcatatctaaa 469  Q
    | ||||| || || |||||||||||||||    
T  34764688 aaaaacagttctagtgatgcatatctaaa 34764716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 343 - 548
Target Start/End: Complemental strand, 41368806 - 41368597
Alignment:
Q  343 taaaagaacttaacataaattttatctaatgttgattaactgaatcacct-----ctctcgttaccttcattcacaagaagtataattttaagtggttca 437  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||| | |     ||||| |||| |||| |||||| |||||||||||| |||||||||    
T  41368806 taaaagaactcaacttaaattttatttaatgttgattaactgaatctcttttaatctctcattactttcactcacaaaaagtataatttttagtggttca 41368707  T
Q  438 tcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttct 537  Q
    || ||||||| ||  |  |||||||||||||||||||||    ||||| ||  || | |||| |||| ||||||||||||||||||| ||||||||||||    
T  41368706 tcaagaaacatttacaccgatgcatatctaaaattgaataacgtacatttc-gctgaattttcacaagattgtctcacttttttacctttcatcttttct 41368608  T
Q  538 aagatacgtat 548  Q
    | |||| ||||    
T  41368607 aggatatgtat 41368597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 27925727 - 27925672
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcatt 409  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  27925727 aacacaaattttatctaatgttgattaattgaatcatctctctcgtcaccttcatt 27925672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 472
Target Start/End: Complemental strand, 29675060 - 29674927
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcg--ttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||  | |||| ||||||||| |||  ||| |||| |||||||||||||| |  ||| ||||||  | ||||||||||||||||||||||||||    
T  29675060 attaaaagatatcaacacaaattttatttaagattggttaattgaatcacctctcttgcattatcttcatctataagaagtataattttaagtggttcat 29674961  T
Q  439 cgagaaacaattttattgatgcatatctaaaatt 472  Q
    ||  ||| |||| || | || |||||||||||||    
T  29674960 cgtaaaataattctactaatacatatctaaaatt 29674927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 12848542 - 12848586
Alignment:
Q  518 ttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||    
T  12848542 ttttccccttcattttttctaagatacgtatatgtaaagtatctt 12848586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 538
Target Start/End: Original strand, 28470234 - 28470306
Alignment:
Q  466 taaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttcta 538  Q
    |||||||||||  |||||||||||| | | |||| | || ||| |||||||||||||||||||| ||||||||    
T  28470234 taaaattgaattatatacatctctagtgaattttcataaaattatctcacttttttacccttcaacttttcta 28470306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 5e-73; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 302 - 562
Target Start/End: Original strand, 32340165 - 32340422
Alignment:
Q  302 tatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgtta 401  Q
    |||||||||||||||| ||| || ||||||| ||||||||   |||||||| |||| |||||||||||||||||||||| |||||| |||||||| ||||    
T  32340165 tatattttcatatgttgggatatcgagagaatcatcatca---aaagaactcaacacaaattttatctaatgttgattagctgaattacctctcttgtta 32340261  T
Q  402 ccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagttttta 501  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||| | |||||||||  ||||||||| |||| |  |||||    
T  32340262 ccttcattcccaagaagtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactga-atttta 32340360  T
Q  502 caacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||    
T  32340361 caacattgtctcacttttttacccttcatctttttctaggatacatatatgtgaagtatctt 32340422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 2032232 - 2032475
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||||||| |||||||||| |||||| |  ||||||||| |||| ||||||||||||||||||||||||||||| ||    
T  2032232 ataaaccatattacattttcatatgttaggatattgagagaaacatcatta--aaaagaactcaacacaaattttatctaatgttgattaactgaataac 2032329  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcat-cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctct 489  Q
     ||||||| ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| || ||||||||  |    
T  2032330 atctctcgctacgttcatccacaagaagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacatcaat 2032429  T
Q  490 actaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    | | | ||||||||| |||||||||||||||||| ||||| |||||    
T  2032430 aatgaatttttacaatattgtctcacttttttactcttcacctttt 2032475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 687960 - 688226
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||||||| || ||||||| ||||||   ||||||||||  ||| |||||||||||||||   ||||||||||||||    
T  687960 ataaaccatattacattttcatatgttaggatatcgagagaaacatcat---taaaagaactcgacacaaattttatctaatg---attaactgaatcac 688053  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    || ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||    
T  688054 ctttcttgctacattcatccacaagaagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctata 688153  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
     | | |||||||| |||||||||| |||||||| ||||||| ||||||  |||||||||| || |||||||||    
T  688154 atgaatttttacagcattgtctcatttttttactcttcatctttttctttgatacgtatacgtgaagtatctt 688226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 339 - 561
Target Start/End: Complemental strand, 10229647 - 10229422
Alignment:
Q  339 tcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||  |||||||||||||||||||||||||||||    
T  10229647 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 10229548  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttc 536  Q
    ||| | |||||||| || | ||||||||||| ||||||||| ||||||||||||   | | ||| |||||||||||||||||||||| |||||||||||     
T  10229547 atcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttactcttcatcttttt 10229448  T
Q  537 taa-gatacgtatatgttaagtatct 561  Q
     || ||||||||||||| || |||||    
T  10229447 gaaggatacgtatatgtgaaatatct 10229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 341 - 562
Target Start/End: Original strand, 2988051 - 2988274
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctct--ctcgttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| | || ||||||||| |||||||||||||||| ||||  |||||||||||| | ||||| || ||||||||||||||||||||    
T  2988051 attaaaagaactcaacacatatattatctaatattgattaactgaatcagctctctctcgttaccttcttccacaaaaaatataattttaagtggttcat 2988150  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttct 537  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | | |||| |||||| ||| || ||||||| ||||||| ||||||    
T  2988151 cgagaaacaattttagtgatgcatatctaaaattgaatcatatacatctctactgaatgtttataacattatctgac-tttttactcttcatctttttct 2988249  T
Q  538 aagatacgtatatgttaagtatctt 562  Q
    | ||||||||| ||| || ||||||    
T  2988250 aggatacgtatttgtgaactatctt 2988274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 521
Target Start/End: Complemental strand, 30928498 - 30928331
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatttta 453  Q
    |||| |||||||||  |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||    
T  30928498 aacacaaattttattcaatgttgattaattgaatcatctctctcgttaccttcattcataagaagtataattttaagtggttcatcaagaaacaattata 30928399  T
Q  454 ttgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttttt 521  Q
     || ||||||| |||||||||||| |||||||||||||| | ||| |||||||||||||| |||||||    
T  30928398 ctggtgcatatataaaattgaatcatatacatctctacttaatttctacaacattgtctcgctttttt 30928331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 359 - 562
Target Start/End: Complemental strand, 8486123 - 8485919
Alignment:
Q  359 aaattttatctaatgttgattaactgaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattg 456  Q
    ||||||| ||||||||||||||  |||||| |  |||||||||||||| ||| | ||||||||||||||||||| |||||||| |||||||||| || ||    
T  8486123 aaattttgtctaatgttgattagttgaatctcatctctctcgttacctccatccgcaagaagtataattttaagcggttcatcaagaaacaattctactg 8486024  T
Q  457 atgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaag 556  Q
    ||||||||||||||||||||| |||||||||  ||| |  ||| |||||| | ||||| |||||||||||| || ||||||| ||||||||||||| |||    
T  8486023 atgcatatctaaaattgaatcatatacatctacactga-atttcacaacactatctcaattttttaccctttattttttctaggatacgtatatgtgaag 8485925  T
Q  557 tatctt 562  Q
    | ||||    
T  8485924 tgtctt 8485919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 342 - 541
Target Start/End: Complemental strand, 22054080 - 22053883
Alignment:
Q  342 ttaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcga 441  Q
    ||||||||||| |||||  |||| |||||| ||||||||| ||||| | ||||||| |||||||||| || | ||||||||| |||| |||||||||  |    
T  22054080 ttaaaagaactcaacatgcatttcatctaaagttgattaattgaatgatctctctcattaccttcatccagaggaagtataaattta-gtggttcatt-a 22053983  T
Q  442 gaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaaga 541  Q
    |||||||||  | |||||| |||||||||||||| | || ||||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||    
T  22053982 gaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaaga 22053883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 337 - 562
Target Start/End: Original strand, 12311945 - 12312170
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||| ||||||||| |||| || |||| | ||||||||||||| |||||  ||||||||  |||| |||||| |||||    |||||||| |||||||    
T  12311945 catcatcaaaagaactcaacacaagttttgtttaatgttgattaattgaatatcctctctctcgttaacttcatccacaac---tataatttaaagtggt 12312041  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtc-tcacttttttacccttcatctt 533  Q
    | |||||||||||||| |||||||||||||||||||||||||  ||||||| || ||| | |||| ||||||||||| | ||||| ||||||||||| ||    
T  12312042 tgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtctttactttcttacccttcatttt 12312141  T
Q  534 ttctaagatacgtatatgttaagtatctt 562  Q
    ||||| ||||| ||| | | |||||||||    
T  12312142 ttctaggatacatatctttgaagtatctt 12312170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 341 - 490
Target Start/End: Complemental strand, 7435019 - 7434868
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| |||| ||||||| ||||||||||||||||||||||  ||||||||||||  | || || ||||||||||||||||||| |||    
T  7435019 attaaaagaactcaacacaaatgttatctagtgttgattaactgaatcacctctctctcgttacctttgtccataaaaagtataattttaagtggtccat 7434920  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||||||| |  | | |||||||||| |||||||| |||| |||||||    
T  7434919 cgagaaacaattctcgtaacgcatatctaagattgaatcatatagatctcta 7434868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 337 - 485
Target Start/End: Original strand, 12283640 - 12283790
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctct--ctcgttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||||| | |||| |||||||   ||||||||||||| |||||| |||||  ||||||| |||||| ||||| ||||||||||| |||||||    
T  12283640 catcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctctcgttaacttcatccacaaaaagtataatttaaagtggt 12283739  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacat 485  Q
    ||||| |||||||||| || |||||||||||||| | |||||  |||||||    
T  12283740 tcatccagaaacaattctactgatgcatatctaatactgaattgtatacat 12283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 22297248 - 22297361
Alignment:
Q  292 taaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    ||||||||| |||||||||||||||| ||| ||  ||| ||||||  |   |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22297248 taaaccatattatattttcatatgttgggatatcaagataagcattgt---taaaagaactcaacataaattttatctaatgttgattaactgaatcacc 22297344  T
Q  392 tctctcgttaccttcat 408  Q
    ||||| |||||||||||    
T  22297345 tctcttgttaccttcat 22297361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 10567415 - 10567349
Alignment:
Q  403 cttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaa 469  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10567415 cttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaa 10567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 535
Target Start/End: Original strand, 22297370 - 22297444
Alignment:
Q  460 catatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    ||||||||||||| | || |||||||||||| | | |||||||||| ||||||||||||||| |||||||||||||    
T  22297370 catatctaaaattaagtcatatacatctctattgaatttttacaacgttgtctcactttttt-cccttcatctttt 22297444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 535
Target Start/End: Original strand, 6724483 - 6724595
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctact-aagtttttacaacattgtctcactttttta 522  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||| |||||||||| |||||||||| | | || |||| ||||||  | ||||||||||||    
T  6724483 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcacaacacagcctcactttttta 6724582  T
Q  523 cccttcatctttt 535  Q
    || ||||| ||||    
T  6724583 ccattcatttttt 6724595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 561
Target Start/End: Original strand, 26546168 - 26546259
Alignment:
Q  470 attgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatct 561  Q
    |||||| | ||||||||| || ||| | || |||||||| ||||||||||||||||||||| |||| | | |||| | ||||| ||||||||    
T  26546168 attgaaccatatacatctttattaaatcttcacaacattatctcacttttttacccttcatttttttttaaatacatgtatgtgaagtatct 26546259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 11789251 - 11789492
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||| ||| |||||||||| ||||   |||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  11789251 ataaaccatattacattttcatatgttgggatattgagagaaacatc---attaaaagaactcaacacaaattttatctaatgttgattaactgaatcac 11789347  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| ||  ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||| ||    
T  11789348 atctctcgctatgttcatccacaagaagtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgagtcatatacatctata 11789447  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
     | | ||||||||||||||||||||||| |||| |||||||||||    
T  11789448 atgaatttttacaacattgtctcactttcttactcttcatctttt 11789492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 291 - 562
Target Start/End: Complemental strand, 25430269 - 25429998
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| ||||||||||||||||  |  || |||||||| || ||   |||||||||| |||| | ||||||| ||||||||||||||||||||||    
T  25430269 ataaaccatattatattttcatatgttttgttatcgagagaagaataat---taaaagaactcaacacatattttatttaatgttgattaactgaatcac 25430173  T
Q  391 c--tctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
    |  |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||| |||| ||||     
T  25430172 ccctctctcattaccttcattcacaagaagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctg 25430073  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    |  | | |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||  |||||||||    
T  25430072 tcatgaatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatctt 25429998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 18928436 - 18928707
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| ||||||||||||||||  || || ||| ||||||| ||   |||||||||| |||| ||||||||| |||| |||||||||||||||||    
T  18928436 ataaaccatattatattttcatatgttcagatatcgagtgaagcataat---taaaagaactcaacacaaattttatttaatattgattaactgaatcac 18928532  T
Q  391 --ctctctcgttaccttcattc-acaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatct 487  Q
      ||||||||||| |||||| | |||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  18928533 atctctctcgttatcttcatcccacaaaaaatataattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatct 18928632  T
Q  488 ctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    | | | | ||||||||||||||||||| |||||||| | |||| ||||||| |||| |||||||| |||||||||    
T  18928633 caattcaatttttacaacattgtctcaattttttactcctcatattttctaggataagtatatgtaaagtatctt 18928707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 291 - 562
Target Start/End: Complemental strand, 6166679 - 6166410
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    ||||| |||| || ||||||||||| |  || |||||||||   | |||||||||||||||||||||| |||||||| ||||||||  ||||||||||||    
T  6166679 ataaatcatattacattttcatatgatgtgatattgagaga---aacatcattaaaagaacttaacattaattttatttaatgttgtctaactgaatcac 6166583  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||| ||| ||| | |||||||| |||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||||| | ||    
T  6166582 ctctctcgctacgttcttccacaagaaatataattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttata 6166483  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcat-cttttctaagatacgtatatgttaagtatctt 562  Q
     | | |||||||||||||||||||||||||||| ||||||  ||||||| ||||||||| | | |||||||||    
T  6166482 atgaatttttacaacattgtctcacttttttactcttcatgtttttctaggatacgtatctataaagtatctt 6166410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 24728435 - 24728701
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| || |||||||| || ||   |||||||| | |||||||||||||||||||||||||||||||||||||    
T  24728435 ataaaccatattatattttcatatgtttggatatcgagagaagaataat---taaaagaagtcaacataaattttatctaatgttgattaactgaatcac 24728531  T
Q  391 --ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
      |||||||||||||||||| |||||||||||||||||||| ||||||| |  |||||||||  | | |||||||||     ||||||| |||| |||||    
T  24728532 ctctctctcgttaccttcatccacaagaagtataattttaaatggttcaccatgaaacaattccactaatgcatatc-----ttgaatcatatagatctc 24728626  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    | || | |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||  |||||||||    
T  24728627 tcctgaatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatctt 24728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 24888644 - 24888887
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| ||||||||||||||||  |  || |||||||| || ||   |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  24888644 ataaaccatattatattttcatatgttttgttatcgagagaagaataat---taaaagaactcaacatatattttatctaatgttgattaactgaatcac 24888740  T
Q  391 c--tctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
    |  |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| || | ||||||||||||||||||||| |||| || |     
T  24888741 ccctctctcattaccttcattcacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgaatcatatatatttg 24888840  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |  | | ||||||||| |||||||||||| |||||||||||||||||    
T  24888841 tcatgaatttttacaatattgtctcacttgtttacccttcatctttt 24888887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 341 - 562
Target Start/End: Complemental strand, 32856217 - 32855995
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||| | ||||  |||||||||||||||||||||||||| ||||||  ||||| |||||||||| ||||||||||||| |||||||||||||||    
T  32856217 attaaaagaattcaacacgaattttatctaatgttgattaactga-tcacctttctctcattaccttcatccacaagaagtatagttttaagtggttcat 32856119  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttct 537  Q
    |||||||||||| || |||| |||||||||||||||||| |||||||||||||| | | |||||||||||||||| ||||||||| ||||||| ||||||    
T  32856118 cgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgtctcgcttttttactcttcatctttttct 32856020  T
Q  538 aagatacgtatatgttaagtatctt 562  Q
    | ||||||||| ||| |||||||||    
T  32856019 aggatacgtatctgtgaagtatctt 32855995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 359 - 535
Target Start/End: Original strand, 23877333 - 23877511
Alignment:
Q  359 aaattttatctaatgttgattaactgaatcacctct--ctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattg 456  Q
    ||||||||||||||||| |||||||||| |||||||  ||||||||||| || ||||| |||||||||||||||||||||||||  |||||||| || |     
T  23877333 aaattttatctaatgttaattaactgaaccacctctctctcgttacctttatccacaataagtataattttaagtggttcatcggaaaacaattctagtc 23877432  T
Q  457 atgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    ||||||||||||||||||||| |||| ||||||||| | | ||||||||||  ||||||||| |||| |||||||||||    
T  23877433 atgcatatctaaaattgaatcatatatatctctactgaatgtttacaacatgatctcactttcttactcttcatctttt 23877511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 342 - 535
Target Start/End: Complemental strand, 9410127 - 9409936
Alignment:
Q  342 ttaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcga 441  Q
    ||||||||||| |||| ||| |||||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||| ||||||||    
T  9410127 ttaaaagaactcaacacaaaatttatctaatattgattaactgaatcacatctctcgctacgttcatccacaagaagtataattttaagtgtttcatcga 9410028  T
Q  442 gaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||| |||| |||||||| |||| ||||||||| || ||||||||| || | | ||||||||| |  |||| |||||||||| |||||| ||||    
T  9410027 gaaataattctattgatgaatatgtaaaattgagtcatatacatctataatgaatttttacaaaa--gtcttacttttttactcttcatttttt 9409936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 17748796 - 17748922
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| ||||||||||||||||||||||||| ||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||    
T  17748796 attaaaagaactgaacacaaattttatctaatgttgattaacttaatcacctttctctcgttaacttcatccacaagaagtataattttaagtggttcat 17748895  T
Q  439 cgagaaacaattttattgatgcatatc 465  Q
     ||||||||||| || |||||||||||    
T  17748896 tgagaaacaattctagtgatgcatatc 17748922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 337 - 559
Target Start/End: Complemental strand, 11990947 - 11990725
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||||| | || | ||||||| |||||| |||||||| ||||||  ||  |||||||||||||| | ||||   ||||||||||| ||||||    
T  11990947 catcattaaaagaattcaatacaaattttgtctaatattgattaattgaatcttctttctctcgttaccttcgtccacag--agtataatttttagtggt 11990850  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttt 534  Q
    | ||| |||||||||| || | |||||||||||||||||| |  ||||||| || ||| | ||||  ||||| |||| ||||||| ||||||||||||||    
T  11990849 ttatctagaaacaattctactaatgcatatctaaaattgagttatatacatatccactgaattttcgcaacaatgtcacacttttctacccttcatcttt 11990750  T
Q  535 tctaagatacgtatatgttaagtat 559  Q
    |||| |||| |||||| ||||||||    
T  11990749 tctaggatatgtatattttaagtat 11990725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 416 - 551
Target Start/End: Complemental strand, 12006836 - 12006702
Alignment:
Q  416 aagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcac 515  Q
    ||||||||||||||| |||||||| | |||||||| || ||||||||||||||||||||||| |||||||||| ||| | |||| ||||||||||| |||    
T  12006836 aagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaacattgtc-cac 12006738  T
Q  516 ttttttacccttcatcttttctaagatacgtatatg 551  Q
    ||||| |||||| || ||||||| ||| ||||||||    
T  12006737 tttttcaccctttattttttctaggatgcgtatatg 12006702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 337 - 538
Target Start/End: Original strand, 31431306 - 31431515
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttacct-tcattcacaagaagtata----attttaa 429  Q
    |||||||||||||||| |||| ||||||| |||||| |||||||  |||||| | ||||||  ||||||  |||| || ||||| ||||    |||||||    
T  31431306 catcattaaaagaactcaacacaaattttgtctaatcttgattatttgaatctcatctctcttgttacccctcatccataagaaatatatataattttaa 31431405  T
Q  430 gtggttcatcgagaaacaattttattgatgcatatctaa-aattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttc 528  Q
    |||||||||| | |||||||| |||| || ||||||||| ||||||||| |||||||||   || | ||||||||| ||||||||||| ||||| ||| |    
T  31431406 gtggttcatcaaaaaacaattctattaatacatatctaataattgaatcatatacatctgcgctgaatttttacaatattgtctcactcttttatcctcc 31431505  T
Q  529 atcttttcta 538  Q
    ||||||||||    
T  31431506 atcttttcta 31431515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 11755680 - 11755766
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatc 477  Q
    |||||||||||||||||  | ||||||||||||||||||| |||||||| |||||||||| || | |||||||||||||||||||||    
T  11755680 ctctctcgttaccttcaaccgcaagaagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattgaatc 11755766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 412 - 521
Target Start/End: Complemental strand, 18320836 - 18320728
Alignment:
Q  412 caagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtc 511  Q
    |||||||||||||||| || | |||||| ||||||| || || | ||||||||||||||||||||| |||||||||| |||||  ||| |||||||||||    
T  18320836 caagaagtataattttgagcgattcatcaagaaacatttctacttatgcatatctaaaattgaatcatatacatctccactaa-atttcacaacattgtc 18320738  T
Q  512 tcactttttt 521  Q
    ||||||||||    
T  18320737 tcactttttt 18320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 434 - 562
Target Start/End: Complemental strand, 13003466 - 13003341
Alignment:
Q  434 ttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctt 533  Q
    ||||||||||||||||| || | ||||||||||||||||||||| ||||||  |||| | | ||| |||||||||||||||| ||||||| |||||| ||    
T  13003466 ttcatcgagaaacaattctagttatgcatatctaaaattgaatcatataca--tctattgaatttctacaacattgtctcac-tttttacacttcatatt 13003370  T
Q  534 ttctaagatacgtatatgttaagtatctt 562  Q
    ||||| ||| | ||||||| || ||||||    
T  13003369 ttctacgatgcatatatgtgaaatatctt 13003341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 443 - 562
Target Start/End: Original strand, 17748925 - 17749045
Alignment:
Q  443 aaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcat-cttttctaaga 541  Q
    |||||||| || |||||||||||  |||||||||| |||||||||||||| | | | |||||| ||||||||||||||||| |||| |  ||||||| ||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctctactgaatgtatacaacgttgtctcacttttttactcttcgtatttttctagga 17749024  T
Q  542 tacgtatatgttaagtatctt 562  Q
    ||||||| ||| |||||||||    
T  17749025 tacgtatttgtgaagtatctt 17749045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 420 - 559
Target Start/End: Original strand, 9136732 - 9136871
Alignment:
Q  420 ataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttt 519  Q
    |||||||||| ||||| ||||| |||||||| || |||| | ||| | |||||||||| ||||  |||| | | | |||| ||||||   ||||||||||    
T  9136732 ataattttaattggttaatcgaaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcactttt 9136831  T
Q  520 ttacccttcatcttttctaagatacgtatatgttaagtat 559  Q
    ||||||||||| ||||| | ||||||| | ||| ||||||    
T  9136832 ttacccttcattttttccaggatacgtctctgtgaagtat 9136871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 14180161 - 14180023
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac 523  Q
    |||||| ||||| ||||| ||| |||| || |||| ||||||| |||||||||| |||||||||| | | | |||| | ||||   ||||||||||||||    
T  14180161 ttttaattggttaatcgaaaaa-aattatagtgatacatatcttaaattgaatcatatacatctccattgaattttcaaaacacattctcacttttttac 14180063  T
Q  524 ccttca-tcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||| | ||||| ||||||||| | ||| |||||||||    
T  14180062 ccttcatttttttccaagatacgtctctgtgaagtatctt 14180023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 26079507 - 26079423
Alignment:
Q  466 taaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatat 550  Q
    |||||||||||  ||||||| || ||| | |||| |||| |||||||||||||| ||| ||||||||||| | |||||| |||||    
T  26079507 taaaattgaattttatacatttccactgaattttcacaatattgtctcacttttgtactcttcatcttttatgagatacatatat 26079423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 535
Target Start/End: Complemental strand, 37231859 - 37231779
Alignment:
Q  455 tgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||| ||||||| |||||||||| |||||||||| | | | |||| ||||||   ||||||||||||||||||||| ||||    
T  37231859 tgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacacaatctcacttttttacccttcatttttt 37231779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 43101052 - 43101005
Alignment:
Q  496 tttttacaacattgtctcacttttttacccttcatcttttctaagata 543  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||||||||    
T  43101052 ttttaacaacatcgtctaacttttttacccttcattttttctaagata 43101005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 562
Target Start/End: Original strand, 27163966 - 27164173
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatttta 453  Q
    |||| |||||||||  |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| ||    
T  27163966 aacacaaattttattcaatgttgattaattgaatcacctctctcgttaccttcatccataagaagtataaatttaagtggttcatcgagaaataattata 27164065  T
Q  454 ttgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgtt 553  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||||     
T  27164066 ttgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcactttttt-cccttcatcttttctaggatacgtatatgtg 27164164  T
Q  554 aagtatctt 562  Q
    |||||||||    
T  27164165 aagtatctt 27164173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 341 - 535
Target Start/End: Complemental strand, 45472797 - 45472603
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  45472797 attaaaagaacccaacacaaattttatctaatgttgattaactgaatcacctctctcgttaccttcatccacaagaagtataattttacgtgattcatcg 45472698  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||| |||||||||| |||||||||||    
T  45472697 agaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaacttttttactcttcatctttt 45472603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 341 - 552
Target Start/End: Original strand, 38489651 - 38489861
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  38489651 attaaaagaattcaacaccaattttatctaatgttgattaactgaatcaactctctcgttactttcatccgcaagaagtataattttaagtggttcatcg 38489750  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaag 540  Q
    |||||||||| || | ||||||||||||||||||||| |||||||||||||| | | ||||||||||| | ||||||||||||  ||||| |||| || |    
T  38489751 agaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcacttttttactattcat-ttttttagg 38489849  T
Q  541 atacgtatatgt 552  Q
    ||||||||||||    
T  38489850 atacgtatatgt 38489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 291 - 559
Target Start/End: Complemental strand, 29324329 - 29324060
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||| ||| ||||||| |||||||| ||| || ||||||| |||||| |  |||| || | |||||||||||||||||||||  ||||||| ||||||    
T  29324329 ataaacaatattatatttacatatgttgggatatcgagagaaacatcatta--aaaaaaaatcaacataaattttatctaatgtgtattaacttaatcac 29324232  T
Q  391 --ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctc 488  Q
      ||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||     
T  29324231 ttctctctcgttacctttatccacaagaaatataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctt 29324132  T
Q  489 tactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtat 559  Q
    || | |  ||||||||||||| ||||||||||||| ||||||| |||| || ||||||||| ||| ||||||    
T  29324131 tattgaagttttacaacattgcctcacttttttactcttcatctttttttaggatacgtatttgtgaagtat 29324060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 291 - 548
Target Start/End: Original strand, 46979230 - 46979485
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || |||||||||||||  || || ||||||| ||||   |||||||||||| |||  ||||||||| | ||||||||||||| ||||||    
T  46979230 ataaaccatattacattttcatatgttgcgatatcgagagaaacatc---attaaaagaactcaacgcaaattttatgtgatgttgattaactaaatcac 46979326  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||| ||| ||||| ||||||||||||||||||||||| ||||||   |||||||| |||| ||| ||||||||||||||||| ||||||||| ||    
T  46979327 ctctctcgctacgttcatccacaagaagtataattttaagtgattcatcagtaaacaattctattaatgtatatctaaaattgaatcttatacatctata 46979426  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtat 548  Q
     | | |||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||    
T  46979427 atgaatttttacaacgttgtctcacttttttactcttcatctttttctaggatacgtat 46979485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 337 - 562
Target Start/End: Complemental strand, 40615023 - 40614798
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  ||||||| |||| ||||| ||||  ||  |||| ||||||||||    
T  40615023 catcattaaaagaacgcaacacaaattttatataatgttgattaattggatcacttctctctcattactttcatccacagtaa--ataaatttaagtggt 40614926  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttt 534  Q
    |||||||||||||| | || ||||| ||||||||||||||| | |||||||||||| | | ||||||||| ||||||||||||||||||| |||||||||    
T  40614925 tcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacctttcatcttt 40614826  T
Q  535 tctaagatacgtatatgttaagtatctt 562  Q
    |||||||||||||| | | |||||||||    
T  40614825 tctaagatacgtatctatgaagtatctt 40614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 341 - 572
Target Start/End: Complemental strand, 36505020 - 36504788
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| ||||||||||||||||||| || | ||||||||||||||  |||| |||||| || |||||||| |||||||| ||||||||    
T  36505020 attaaaagaactcaacacaaattttatctaatgttgaatatccgaatcacctctctctcgttatcttcatccataagaagtagaattttaattggttcat 36504921  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttct 537  Q
    |||||||||||| || ||||||||||||||||||||| | |||||||| ||||| |  | ||||||||||||||||||| ||||| ||||||| ||||||    
T  36504920 cgagaaacaattctagtgatgcatatctaaaattgaaccatatacatc-ctactga-atgttacaacattgtctcacttgtttactcttcatctttttct 36504823  T
Q  538 aagatacgtatatgttaagtatctttgtctatctg 572  Q
    | ||||||||| ||| |||| ||  ||||||||||    
T  36504822 aggatacgtatctgtgaagtctccatgtctatctg 36504788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 52204100 - 52204271
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||| | || ||||| ||||||||| || ||||||| ||||    
T  52204100 ctctctcgttaccttcatccacaataagtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttcta 52204199  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||| || ||||||    
T  52204200 ctaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatctt 52204271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 291 - 519
Target Start/End: Original strand, 7629074 - 7629299
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||| ||||||| ||| |||| ||||| ||||||   || ||||| | ||   |||||||||||| |||||||||||||||||||    
T  7629074 ataaaccatattacattttaatatgttgggatattgggagaaacatcat---tacaagaaatcaatgcaaattttatctattgttgattaactgaatcac 7629170  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| |    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |     
T  7629171 atctctcgctgtggtcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctatt 7629270  T
Q  491 ctaagtttttacaacattgtctcactttt 519  Q
     | | ||||||||||||||||||| ||||    
T  7629271 atgaatttttacaacattgtctcattttt 7629299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 354 - 565
Target Start/End: Original strand, 20178974 - 20179179
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatttta 453  Q
    |||| |||||||||| ||||||   ||| |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||||||  |    
T  20178974 aacacaaattttatccaatgtt---taattgaatcacctctctcgttacattcatccataagaaatataattttaagtggttcatcaagaaacaattcaa 20179070  T
Q  454 ttgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgtt 553  Q
     |||| |||||||||||||||||| ||||||||||  || | ||| |||||||||||||||| ||||| |||||||||||||||| ||||||| | |||     
T  20179071 ctgatacatatctaaaattgaatcatatacatctc--ctgaatttctacaacattgtctcac-tttttccccttcatcttttctaggatacgtttctgtg 20179167  T
Q  554 aagtatctttgt 565  Q
    ||||||| ||||    
T  20179168 aagtatccttgt 20179179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 361 - 562
Target Start/End: Original strand, 52695505 - 52695709
Alignment:
Q  361 attttatctaatgttgattaactgaatcacc--tctctcgttaccttcattcacaagaagtataattttaagtg--gttcatcgagaaacaattttattg 456  Q
    ||||||||||||||||||||| |||||||||  |||||| |||||||||| ||||||||| |||| ||||||||  ||||||| ||||| |||| || ||    
T  52695505 attttatctaatgttgattaattgaatcacccctctctcattaccttcatccacaagaag-ataaatttaagtgtggttcatcaagaaataattctaatg 52695603  T
Q  457 atgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaag 556  Q
    ||||||||||||||||||| | || ||||||||||  | ||||||||| ||||||||||||||| |||||||||||||| || |||| |||| ||| ||     
T  52695604 atgcatatctaaaattgaaccatacacatctctacggaatttttacaaaattgtctcactttttgacccttcatcttttataggataagtatctgtgaaa 52695703  T
Q  557 tatctt 562  Q
    ||||||    
T  52695704 tatctt 52695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 544
Target Start/End: Complemental strand, 32835414 - 32835231
Alignment:
Q  365 tatctaatgttgattaactgaatcacctctctcgt--taccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcat 462  Q
    |||||||| ||||||||||||||||| | |||| |  |||||| || ||||| ||||||||||||||||||||||| ||| ||||||| |||| ||||||    
T  32835414 tatctaatattgattaactgaatcacatatctcttattaccttaatccacaataagtataattttaagtggttcattgagcaacaattctattaatgcat 32835315  T
Q  463 atctaaaattg--aatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatac 544  Q
    |||||||||||  |||| |||||||||| ||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  32835314 atctaaaattgaaaatcatatacatctcaactgaatttttacaacattgtctcac-tttttacccttcatctttttctaagatac 32835231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 337 - 562
Target Start/End: Original strand, 20369162 - 20369392
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctc--tcgttaccttcattcacaagaagtataat----tttaag 430  Q
    ||||| |||||||||| || | ||||||| |||||||||  |||| | |||| ||||||  | ||||||||| | |||| |||||| |||    | ||||    
T  20369162 catcactaaaagaactcaatacaaattttgtctaatgttagttaattaaatctcctctcatttgttaccttcttccacacgaagtagaatcgtttgtaag 20369261  T
Q  431 tggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcat 530  Q
    || ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| | | | |||| |||||||||| |||||||||||||||| ||    
T  20369262 tgattcatcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacccttaat 20369360  T
Q  531 cttttctaagatacgtatatgttaagtatctt 562  Q
    |||||| | |||| |||||||| || ||||||    
T  20369361 cttttcaaggatatgtatatgtgaaatatctt 20369392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 341 - 562
Target Start/End: Original strand, 39614969 - 39615184
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||||| | || ||||||||||||| ||||||||| | |||||  ||||||||||||||||| || ||||||||||||||||| |||||||||     
T  39614969 attaaaagaactcatcacaaattttatctaacgttgattaattaaatcatatctctcgttaccttcatccataagaagtataattttaattggttcatcc 39615068  T
Q  441 agaaa--caattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttcta 538  Q
    | |||  | | | || ||| | || | ||||||||||||  |||||||||| || | |||||||||||||        ||||||||||||||||||||||    
T  39615069 aaaaattctactctactgaagtatgt-taaaattgaatcacatacatctcttctgaatttttacaacatt-------atttttacccttcatcttttcta 39615160  T
Q  539 agatacgtatatgttaagtatctt 562  Q
    |||||||||| ||| |||||||||    
T  39615161 agatacgtatttgtgaagtatctt 39615184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 403 - 562
Target Start/End: Complemental strand, 20619397 - 20619238
Alignment:
Q  403 cttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttac 502  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||| |||| || | ||||||||||||||||||||| ||||||| || ||| | |||| ||    
T  20619397 cttcatccacaagaaatataattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcac 20619298  T
Q  503 aacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||| | |||||||||||||  || |||||||  |||| ||||| | |||||||||    
T  20619297 aacattgtttgacttttttaccctatatattttctagaatacatatatttgaagtatctt 20619238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 544
Target Start/End: Complemental strand, 35296536 - 35296420
Alignment:
Q  425 tttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacc 524  Q
    |||||||| ||||||||||||||||| || | ||||||||||||||||||||| |||| ||||||||| | |||   | | ||||||||||||||||||     
T  35296536 tttaagtgattcatcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt---ctatattgtctcacttttttaca 35296440  T
Q  525 cttcatcttttctaagatac 544  Q
    |||||||||||||| |||||    
T  35296439 cttcatcttttctatgatac 35296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 419 - 513
Target Start/End: Original strand, 52203963 - 52204057
Alignment:
Q  419 tataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctc 513  Q
    ||||||||||||| |||||||| |||||||||||| | || ||||| ||||||||| || ||||||| |||||||| ||||||||||||||||||    
T  52203963 tataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctc 52204057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 423
Target Start/End: Original strand, 51240854 - 51240983
Alignment:
Q  292 taaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacc 391  Q
    ||||||||| |||||||||||||||| ||| || |||| ||    |||| | ||||||||| |||| |||||||||||||| |||||||| |||||||||    
T  51240854 taaaccatattatattttcatatgttgggatatcgagaaaa----catcgtaaaaagaactcaacacaaattttatctaatattgattaattgaatcacc 51240949  T
Q  392 tc--tctcgttaccttcattcacaagaagtataa 423  Q
    ||   ||| |||||||||| ||||||||||||||    
T  51240950 tcaaactctttaccttcatccacaagaagtataa 51240983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 51241345 - 51241411
Alignment:
Q  496 tttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||  |||| |||||||||    
T  51241345 tttttacaacattgtctcacttttttacccatcatcttttctaggatacgttaatgtgaagtatctt 51241411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 53530625 - 53530728
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtat-aattttaagtggttcatc 439  Q
    |||||||||||| |||| ||||||| | |||| |||||||| ||||||  ||||||||||| |||||| |||||||| | | | ||||||| ||||||||    
T  53530625 attaaaagaactcaacacaaattttgtttaatattgattaattgaatctactctctcgttatcttcatccacaagaaatttgatttttaagaggttcatc 53530724  T
Q  440 gaga 443  Q
    ||||    
T  53530725 gaga 53530728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 535
Target Start/End: Original strand, 24611468 - 24611579
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac 523  Q
    |||||| ||||| || || |||||||| || |||| ||||| | |||||||||| |||||||||| | | | |||| ||||||   ||||||||||||||    
T  24611468 ttttaattggttaattgaaaaacaattatagtgattcatatattaaattgaatcatatacatctccattgatttttcacaacacaatctcacttttttac 24611567  T
Q  524 ccttcatctttt 535  Q
    ||||||| ||||    
T  24611568 ccttcatttttt 24611579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 35296590 - 35296535
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcatt 409  Q
    |||| |||||||||| |||||||||||| |||| |||||||||||| |||||||||    
T  35296590 aacacaaattttatccaatgttgattaattgaaccacctctctcgtgaccttcatt 35296535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 17063888 - 17063934
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaat 387  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||    
T  17063888 attaaaggaactcaacacaaattttatctaatgttgattaactgaat 17063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 557
Target Start/End: Original strand, 35941851 - 35941939
Alignment:
Q  469 aattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagt 557  Q
    ||||||||| || | ||||| ||||| |||||| |||||||| | | ||||||||  ||||||||||||||||||  ||||||| ||||    
T  35941851 aattgaatcatacaaatctcaactaaatttttataacattgttttagttttttactattcatcttttctaagatatttatatgtgaagt 35941939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 560
Target Start/End: Original strand, 1341681 - 1341819
Alignment:
Q  424 ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac 523  Q
    |||||| | ||| ||||| |||||||| || |||| ||||||| ||| |||||| ||| |||||||| | | |||| ||||||   | | ||||||||||    
T  1341681 ttttaattagttaatcgaaaaacaattataatgattcatatcttaaaatgaatcatatgcatctctattgaattttcacaacacaatataacttttttac 1341780  T
Q  524 ccttcatcttttct--aagatacgtatatgttaagtatc 560  Q
    ||||||| ||||||  ||||||||| | ||| |||||||    
T  1341781 ccttcattttttctccaagatacgtctttgtgaagtatc 1341819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 341 - 561
Target Start/End: Complemental strand, 13558682 - 13558459
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcat 438  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  13558682 attaaaagaactcaacacacattttatctaatgttgattaactgaatcatctctctctcgttaccttcatccacaagaagtataattttaagtggttcat 13558583  T
Q  439 cgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttct 537  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||| ||| | | | |||||||||||||||||||||||||| ||||||| |||| |    
T  13558582 cgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcacttttttactcttcatcttttttt 13558483  T
Q  538 aagatacgtatatgttaagtatct 561  Q
    | ||||| ||||||| ||||||||    
T  13558482 aggatacatatatgtgaagtatct 13558459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 291 - 535
Target Start/End: Complemental strand, 17116495 - 17116254
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || || |||||||||| ||| |||||||||| ||| ||   |||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  17116495 ataaaccatattacatattcatatgttgggatattgagagaaacataat---taaaagaactcaacacaaattttatctaatgttgattaactaaatcac 17116399  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||||| || ||||||||| ||    
T  17116398 atctctcgttacgttcatccacaagaagtataattttaagtgtttcatcgaaaaataattctattgatgcatatctaaaattgagtcatatacatctata 17116299  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
       | ||||||||||||| |||||||||||||| |||||||||||    
T  17116298 aagaatttttacaacattatctcacttttttactcttcatctttt 17116254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 337 - 574
Target Start/End: Complemental strand, 50726854 - 50726616
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||| | |||    
T  50726854 catcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcacatctctcgctacgttcatccacaagaagtataattttaagcgtttc 50726755  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-tttt 535  Q
    |||||||||||||| |||||| |||||||||||||||| || ||||||||| || | | |||||||||||||||||||||||||||| |||| || ||||    
T  50726754 atcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttactcttcttcttttt 50726655  T
Q  536 ctaagatacgtatatgttaagtatctttgtctatctgtg 574  Q
    |||  |||||| | ||| ||||||| |||| ||||||||    
T  50726654 ctataatacgtgtctgtgaagtatccttgtgtatctgtg 50726616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 341 - 562
Target Start/End: Complemental strand, 14287218 - 14286995
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgtt-gattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatc 439  Q
    |||||||||||| |||| | ||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |    
T  14287218 attaaaagaactcaacacatattttatctaatgtttgattaattgaatcacctctctcattaccttcatccacaagaagtataattttaagtggttcacc 14287119  T
Q  440 gagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttcta 538  Q
    | ||||||||| || | ||||||||||||||||| ||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||| |||||||    
T  14287118 gtgaaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgtctcactttttttcccttcatctttttcta 14287019  T
Q  539 agatacgtatatgttaagtatctt 562  Q
     ||||| ||||||  |||||||||    
T  14287018 ggatacatatatgcgaagtatctt 14286995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 291 - 559
Target Start/End: Original strand, 38682793 - 38683065
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatca- 389  Q
    |||||||||| |||||||| | ||||| ||| || ||||||| ||| || |   |||||||| |||| |||||||||||||||||||||| ||||||||     
T  38682793 ataaaccatattatatttttaaatgttgggatatcgagagaaacataatga---aaagaactcaacacaaattttatctaatgttgattagctgaatcac 38682889  T
Q  390 -----cctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctataca 484  Q
         ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  38682890 catcacctctctcgttaccttcatccacaagaattataattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatataca 38682989  T
Q  485 tctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtat 559  Q
    |||| ||||| || |||||||||| | ||| |||||||||||||||| ||||||| ||||| ||| ||| ||||||    
T  38682990 tctccactaaattgttacaacattatttcatttttttacccttcatctttttctaggatacatatctgtgaagtat 38683065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 302 - 562
Target Start/End: Complemental strand, 4966919 - 4966660
Alignment:
Q  302 tatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatca--cctctctcgt 399  Q
    |||||||||||||||| ||| |||||||||| ||||||   |||||||||| |||| ||||||||| |||||||||||||||||||||   |||||||||    
T  4966919 tatattttcatatgttgggatattgagagaaacatcat---taaaagaactcaacacaaattttatttaatgttgattaactgaatcatctctctctcgt 4966823  T
Q  400 taccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttt 499  Q
    ||| ||||| |||||||||||| ||||||||| |||||||||||||||||| ||  |||| ||||||||||||||||| |||| |||| || | |  |||    
T  4966822 tactttcatccacaagaagtat-attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctatagtga-attt 4966725  T
Q  500 tacaacattgtctcacttttttacccttca--tcttttctaagatacgtatatgttaagtatctt 562  Q
    ||||| ||||||||||||| ||||||||||  | ||||||| ||||| ||||||| |||||||||    
T  4966724 tacaatattgtctcactttattacccttcattttttttctaggatacatatatgtaaagtatctt 4966660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 302 - 562
Target Start/End: Original strand, 4972963 - 4973228
Alignment:
Q  302 tatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcg--- 398  Q
    |||||||| ||||||| ||| |||||||||| ||||||   |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||        
T  4972963 tatatttttatatgttgggatattgagagaaacatcat---taaaagaactcaacacaaattttatctaatgttgattaactgaatcatctctctctctt 4973059  T
Q  399 ---ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaag 495  Q
       |||| ||||| ||||||||||||| |||||||| |||||||||||||||||| ||  |||| ||||||||||||||||| |||| ||||| ||| |     
T  4973060 tccttactttcatccacaagaagtata-ttttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaa 4973158  T
Q  496 tttttacaacattgtctcacttttttacccttca---tcttttctaagatacgtatatgttaagtatctt 562  Q
    ||||||||| ||||||||||||| || |||||||   | ||||||| ||||| ||||||| |||||||||    
T  4973159 tttttacaatattgtctcactttattgcccttcatttttttttctaggatacatatatgtaaagtatctt 4973228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 367 - 562
Target Start/End: Original strand, 31513568 - 31513764
Alignment:
Q  367 tctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatct 466  Q
    |||||||||||||||||||||||| |||||||||||  |||| ||  | |||||||||||||| || ||||||||||||||||| |||||||||||||||    
T  31513568 tctaatgttgattaactgaatcacatctctcgttacgatcatccaacataagtataattttaactgtttcatcgagaaacaattctattgatgcatatct 31513667  T
Q  467 aaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||| || |||||| || || ||| |||||||||||||||||||||||||||| | ||||| ||||||| ||||||| | ||| |||||||||    
T  31513668 aaaattgagtcatatacacctataataaatttttacaacattgtctcacttttttactcctcatctttttctaggatacgtgtctgtgaagtatctt 31513764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 341 - 562
Target Start/End: Original strand, 11767567 - 11767792
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcattcacaagaagtataa---ttttaagtggtt 435  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||||| |  |||||||||| ||||| | ||||||||||||   ||||||||||||    
T  11767567 attaaaagaactcaaca--aattttatctaatgttgattaactgaatcacatttctctcgttactttcatccgcaagaagtataataattttaagtggtt 11767664  T
Q  436 catcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttt 534  Q
     ||||||||| |||| || | ||||||||||||||||||||| |||| ||| ||||  | |||||||||||||||||||| ||||||| ||||||| |||    
T  11767665 aatcgagaaaaaattctagttatgcatatctaaaattgaatcatatatatcgctaccgaatttttacaacattgtctcacatttttactcttcatctttt 11767764  T
Q  535 tctaagatacgtatatgttaagtatctt 562  Q
    |||| ||||||||| | | |||||||||    
T  11767765 tctaggatacgtatctctgaagtatctt 11767792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 354 - 535
Target Start/End: Complemental strand, 40694116 - 40693934
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaatttta 453  Q
    ||||||||||||||||||| |||||||||||||| || ||||||| | | ||||| || |||||||||||||||||||| |||||||| |||||||| ||    
T  40694116 aacataaattttatctaatattgattaactgaatgacatctctcgctgcattcatccaaaagaagtataattttaagtgtttcatcgaaaaacaattcta 40694017  T
Q  454 ttgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttac-ccttcatctttt 535  Q
    ||||||||||||||| ||||| || ||||||||  || | | |||||||||||||||||||||||||||| ||||||| ||||    
T  40694016 ttgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcacttttttactccttcatatttt 40693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 477
Target Start/End: Original strand, 25294513 - 25294696
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || |||||||| |||| | | |||||||||| ||||   |||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  25294513 ataaaccatattacattttcatgtgttggaatattgagagaaacatc---attaaaagaattcaacacaaattttatctaatgttgattaactgaatcac 25294609  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatc 477  Q
     | ||||| ||  ||||| ||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||    
T  25294610 atatctcgctatgttcatccacaaaaagtataattttaagtgttttatcgagaaacacttctattgatgcatatctaaaattgaatc 25294696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 302 - 477
Target Start/End: Complemental strand, 40032869 - 40032694
Alignment:
Q  302 tatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacct--ctctcgt 399  Q
    |||||||||||||||| ||| || |||| || ||||||   |||||||||| |||| ||||||||| ||||||||||||||||||||||||  |||||||    
T  40032869 tatattttcatatgttgggatatcgagaaaaacatcat---taaaagaactcaacacaaattttatataatgttgattaactgaatcaccttcctctcgt 40032773  T
Q  400 taccttcattcacaagaagtataattttaagtggttca-tcgagaaacaattttattgatgcatatctaaaattgaatc 477  Q
    ||||||||||||||||||||||||||||||||| |||| | |  |||||||| |||||| |||||| ||||||||||||    
T  40032772 taccttcattcacaagaagtataattttaagtgattcatttggtaaacaattatattgacgcatatataaaattgaatc 40032694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 337 - 562
Target Start/End: Complemental strand, 16122991 - 16122764
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac-ctctctcgttaccttcattcacaagaagtataattttaagtggtt 435  Q
    ||||||||||||||||||    ||||||  ||||||||||||||  |||||  | ||||||||||||||| || | |||||||| |||||| ||||||||    
T  16122991 catcattaaaagaacttatgcaaaatttg-tctaatgttgattagttgaatatctctctctcgttacctttatccgcaagaagtgtaatttgaagtggtt 16122893  T
Q  436 catcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||| |||||||||| || ||||||||||||||||||||||| ||||||| || | | |  ||| |||||||||||||||||||||||||||||| ||||    
T  16122892 catcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatga-atttcacaacattgtctcacttttttacccttcatttttt 16122794  T
Q  536 ---ctaagatacgtatatgttaagtatctt 562  Q
       ||| ||||||||||||| |||||||||    
T  16122793 gtcctatgatacgtatatgtgaagtatctt 16122764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 291 - 535
Target Start/End: Complemental strand, 41827919 - 41827685
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||| | ||| |||||||||| ||||||   ||||||| |  |||| ||||||||||||||||||||||||||||||||    
T  41827919 ataaaccatattacattttcatatgctgggatattgagagaaacatcat---taaaagatcccaacacaaattttatctaatgttgattaactgaatcac 41827823  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     | ||||| ||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||| |||| || ||||| ||||||||| || ||||| ||  ||    
T  41827822 atttctcgctacgttcatccacaa-aagtataattttaagtgtttcattgagaatcaattctattcatacatatataaaattgagtcatatacctcaata 41827724  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
     | | |||||||||      ||||||||||||| |||||||||||    
T  41827723 atgaatttttacaa------ctcacttttttactcttcatctttt 41827685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 338 - 542
Target Start/End: Complemental strand, 271135 - 270930
Alignment:
Q  338 atcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggtt 435  Q
    |||| |||||||| |||||  ||||||| ||||| ||||||||| |||||  |  |||||||||||||||||| |||||  |||||||||||||||| ||    
T  271135 atcactaaaagaatttaaccaaaattttgtctaacgttgattaattgaatatcttctctctcgttaccttcatccacaaatagtataattttaagtgatt 271036  T
Q  436 catcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    ||| |||||| |||| || ||||| ||||||||||||||||| |||| ||||| |   | |||| |||||||||||| ||  ||||| ||||||||||||    
T  271035 catagagaaagaattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaacattgtcttac-cttttatccttcatctttt 270937  T
Q  536 ctaagat 542  Q
    |||||||    
T  270936 ctaagat 270930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 10443649 - 10443542
Alignment:
Q  455 tgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgtta 554  Q
    ||||| ||||||||||||||||| ||||||||||||||   ||| ||||||||| |||||||||||||  |||||||||||||| ||||| ||||||| |    
T  10443649 tgatgaatatctaaaattgaatcatatacatctctactggatttctacaacattctctcacttttttatacttcatcttttctaggatacatatatgtaa 10443550  T
Q  555 agtatctt 562  Q
    ||||||||    
T  10443549 agtatctt 10443542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 13644017 - 13643903
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    ||||| |||| |||||||||||||||| ||| ||  ||| |||||||||   |||||||||| |||| ||||||||||||||||||| ||| ||||||||    
T  13644017 ataaatcatattatattttcatatgttgggatatcaagataagcatcat---taaaagaactcaacacaaattttatctaatgttgaataattgaatcac 13643921  T
Q  391 ctctctcgttaccttcat 408  Q
    |||||| |||||||||||    
T  13643920 ctctcttgttaccttcat 13643903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 485
Target Start/End: Original strand, 51898854 - 51899003
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctct--ctcgttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||||||| || | || |||| ||||||||||||||| |  ||| |||||  |||||||||||||| |||||||||| |||||||  |||||    
T  51898854 catcattaaaagaactcaa-acaatttttgtctaatgttgattaattctatctcctctttctcgttaccttcatccacaagaagtgtaattttcggtggt 51898952  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacat 485  Q
    |||||||||||||||| ||| | ||||| ||||||||  |||| |||||||    
T  51898953 tcatcgagaaacaattatatcggtgcatgtctaaaataaaatcatatacat 51899003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 558
Target Start/End: Complemental strand, 13643894 - 13643796
Alignment:
Q  460 catatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttc-taagatacgtatatgttaagta 558  Q
    |||||||||||||||||| |||||||||||| | | |||||||||| ||||||||||||||| |||||||||||||| || ||||||| ||||| |||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcactttttt-cccttcatcttttcttatgatacgtgtatgtgaagta 13643796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 535
Target Start/End: Original strand, 46594201 - 46594345
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||||||| ||||| ||| | ||  |||||||| | | | ||||||| |||||||| || |||| ||||||| |||||||||| |||||||||| |    
T  46594201 ctctctcgttactttcatccaccaaaaacataatttttaattggtcatcgaaaaacaattatagtgattcatatcttaaattgaatcatatacatctcca 46594300  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
     | | |||| ||||||| |||||| |||||||  |||||| ||||    
T  46594301 ttgaattttcacaacatagtctcatttttttatacttcatttttt 46594345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 537
Target Start/End: Original strand, 30902299 - 30902485
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacct--ctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattt 451  Q
    |||| ||||||| ||| ||||||||||| |||||| ||   | ||| ||||||||||  |||| || |||||||||||||||||||| ||| |||| | |    
T  30902299 aacacaaattttgtcttatgttgattaattgaatctccatacactcattaccttcatctacaataa-tataattttaagtggttcattgaggaacagtct 30902397  T
Q  452 tattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaa---cattgtctcacttttttacccttcatcttttct 537  Q
     | |||||||||| |||||||||||| |||||||||| | | | |||| ||||    ||||||||||||||| ||  ||||||||||||    
T  30902398 -actgatgcatatttaaaattgaatcatatacatctccattgaattttcacaaaattattgtctcactttttaacagttcatcttttct 30902485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 29488325 - 29488218
Alignment:
Q  455 tgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgtta 554  Q
    |||| ||||||| ||| | |||| |||||||||| ||||| |||| ||||||  ||||||||||||  |||||||| ||||| | |||||||||  || |    
T  29488325 tgatacatatcttaaacttaatcatatacatctccactaaattttcacaacaaagtctcactttttcccccttcattttttccaggatacgtatcagtga 29488226  T
Q  555 agtatctt 562  Q
    ||||||||    
T  29488225 agtatctt 29488218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 535
Target Start/End: Original strand, 50461181 - 50461326
Alignment:
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagt-ggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctct 489  Q
    |||| ||||||| ||||| ||||| ||  |||||||| | | |||| ||||| |||||||| ||| ||| ||||||| |||||||| | |||||||||||    
T  50461181 ctctttcgttactttcatccacaaaaaacataatttttatttggttaatcgaaaaacaattatatcgattcatatcttaaattgaaccatatacatctct 50461280  T
Q  490 actaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    | | | |||| || | ||  |||||||| |||||||||||| ||||    
T  50461281 attgaattttcaccatataatctcacttctttacccttcatttttt 50461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 535
Target Start/End: Complemental strand, 33644955 - 33644921
Alignment:
Q  501 acaacattgtctcacttttttacccttcatctttt 535  Q
    |||||||||||||| ||||||||||||||||||||    
T  33644955 acaacattgtctcatttttttacccttcatctttt 33644921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 5e-70; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 291 - 562
Target Start/End: Original strand, 19721584 - 19721853
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||||||| |||||||||| ||||   |||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  19721584 ataaaccatattaaattttcatatgttaggatattgagagaaacatc---attaaaagaactcaacacaaattttatctaatgttgattaattgaatcac 19721680  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| ||| ||||| ||||||||||||||||||||||| || || ||||||||||| |||||||||||||| |||||| | || |||| |||| ||    
T  19721681 atctctcgctacgttcatccacaagaagtataattttaagtgtttaattgagaaacaattctattgatgcatatccaaaattaagtcatatatatctata 19721780  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
     | | |||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| ||||| |||||||||    
T  19721781 atgaatttttacaacatcgtctcacttttttactcttcatctttttctaggatacgtgtatgtgaagtatctt 19721853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 358 - 562
Target Start/End: Complemental strand, 53586584 - 53586377
Alignment:
Q  358 taaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttatt 455  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || |    
T  53586584 taaattttatctaatattgattaactgaatcacctctctcttgttaccttcatccacgagaagtataattttaagtagttcatcgagaaacaattatagt 53586485  T
Q  456 gatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgtta 554  Q
    ||||||||||| |||||||||| |||||||||||| | | | ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||| |    
T  53586484 gatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcactattttacccttcatctttttctaggatacgtatctgtga 53586385  T
Q  555 agtatctt 562  Q
    ||||||||    
T  53586384 agtatctt 53586377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 291 - 520
Target Start/End: Complemental strand, 2295619 - 2295393
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| || ||||||||||||| ||| |||||||||| |||| |   |||||||||| |||| ||||||||||||||||||||||||||||| ||    
T  2295619 ataaaccatattacattttcatatgttgggatattgagagaaacatcgt---taaaagaactcaacacaaattttatctaatgttgattaactgaattac 2295523  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
     ||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||    
T  2295522 atctctcgctacgttcatccacaagaagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgagtcctatacatctata 2295423  T
Q  491 ctaagtttttacaacattgtctcacttttt 520  Q
     | | ||||||||||||||||||| |||||    
T  2295422 atgaatttttacaacattgtctcaattttt 2295393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 295 - 562
Target Start/End: Original strand, 53018446 - 53018711
Alignment:
Q  295 accataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctct 394  Q
    |||||| || |||||||||||| |||| || ||||||| ||||   |||||||||||| |||||||||||||| |||||||||||||||||||||||| |    
T  53018446 accatattacattttcatatgtcaggacatcgagagaaacatc---attaaaagaactcaacataaattttatttaatgttgattaactgaatcacctat 53018542  T
Q  395 ctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaa 494  Q
    |||| ||  ||||| ||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| |||||| ||  | | |    
T  53018543 ctcgctatgttcatccacaataagtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattgaatcatatacagctagaatga 53018642  T
Q  495 gtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
     |||||| || ||||||||| |||||||| ||||||| ||||||| ||||||||||||| |||||||||    
T  53018643 atttttaaaagattgtctcatttttttactcttcatctttttctaggatacgtatatgtgaagtatctt 53018711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 337 - 562
Target Start/End: Complemental strand, 45774208 - 45773985
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||||| || | |||||||||| ||||||| ||||||||||||||||||||| ||| ||||| || |||   ||||||||||||||||||    
T  45774208 catcattaaaagaactcaagacaaattttatcaaatgttggttaactgaatcacctctctcgctacgttcatccataag---tataattttaagtggttc 45774112  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-tttt 535  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||| || | | |||||||||||||||||||||||||||  ||||||| ||||    
T  45774111 atcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcacttttttattcttcatcttttt 45774012  T
Q  536 ctaagatacgtatatgttaagtatctt 562  Q
    ||| ||||||||| ||| |||||||||    
T  45774011 ctaggatacgtatctgtgaagtatctt 45773985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 291 - 562
Target Start/End: Complemental strand, 27675689 - 27675415
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| || |||| |||||||||   |||||||||| |||| ||||||||||| || || ||||||| ||||||    
T  27675689 ataaaccatattatattttcatatgttgggatatcgagataagcatcat---taaaagaactcaacacaaattttatctgatattaattaactaaatcac 27675593  T
Q  391 ctctctc--gttaccttcattcacaagaagtataattttaagtggttca---tcgagaaacaattttattgatgcatatctaaaattgaatcctatacat 485  Q
    ||||||   ||||||||||| ||||| ||||||| ||||||||||||||   | ||||||||||| |||||||||||||||||||||||||| |||||||    
T  27675592 ctctcttttgttaccttcatccacaaaaagtata-ttttaagtggttcaatattgagaaacaattctattgatgcatatctaaaattgaatcatatacat 27675494  T
Q  486 ctctactaagtttttacaacattgtctcacttttttacccttca--tcttttctaagatacgtatatgttaagtatctt 562  Q
    |||| || | | || |||||||||||||||| ||||||||||||  | ||||||| ||||||||||||| |||| ||||    
T  27675493 ctctgctgaatcttcacaacattgtctcactattttacccttcattttttttctaggatacgtatatgtgaagtgtctt 27675415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 291 - 535
Target Start/End: Original strand, 35103391 - 35103632
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    ||||| |||| |||||||||||||||| ||| || ||||||| ||| ||   |||||||||| |||| ||||||||||||||||||  ||||| ||||||    
T  35103391 ataaaacatattatattttcatatgttgggatatcgagagaaacattat---taaaagaactcaacacaaattttatctaatgttgtgtaactaaatcac 35103487  T
Q  391 ctctctcgttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctcta 490  Q
    |||||||| ||| ||| | ||||||||||||||||||||||| ||||||  ||| ||||| || ||||||||||||||||||||||| ||||||| | ||    
T  35103488 ctctctcgctacgttcttccacaagaagtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattgaatcatatacatttata 35103587  T
Q  491 ctaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
     | | |||||||||||||||||||||||||||| |||||| ||||    
T  35103588 atgaatttttacaacattgtctcacttttttactcttcatgtttt 35103632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 337 - 562
Target Start/End: Original strand, 15476666 - 15476892
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||||| |||  ||||||||||||||||||||||| | |||||| ||||||| ||| ||||| || ||||| ||||||||||||||||||    
T  15476666 catcattaaaagaactcaacgcaaattttatctaatgttgattaattaaatcacttctctcgctacgttcatccataagaattataattttaagtggttc 15476765  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-tttt 535  Q
    |||   ||||||||  ||| ||||||||||||||||||||| || |||||| || | | || ||||||||||||||||| ||||||| ||||||| ||||    
T  15476766 atcagtaaacaattcaattaatgcatatctaaaattgaatcttacacatctataatgaattcttacaacattgtctcacctttttactcttcatcttttt 15476865  T
Q  536 ctaagatacgtatatgttaagtatctt 562  Q
    ||||||||||||| | | |||||||||    
T  15476866 ctaagatacgtatctttgaagtatctt 15476892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 535
Target Start/End: Complemental strand, 6008403 - 6008209
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    |||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||    
T  6008403 attaaaagaactcaacacaaattttatttaatgtttattaactgaatcacctctctcgttacttttatccacaagaagtataattttaagtggttcatcg 6008304  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||||||||| || | || |||||||| ||||||||| ||| | ||||| |||| | ||||  | |||| ||||||||||||| | |||||||||    
T  6008303 agaaacaattctagttatacatatctataattgaatcatatccctctctcctaaatgtttaacaaattgcctcacttttttactcctcatctttt 6008209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 337 - 548
Target Start/End: Complemental strand, 44987468 - 44987256
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctct--cgttaccttcattcacaagaagtataattttaagtggt 434  Q
    ||||||||||||||||  |||  |||||| | ||||||||||||| |||||| | |||||  |||||||||||| |||||||||||||||||||||| ||    
T  44987468 catcattaaaagaactcgaca--aattttgtataatgttgattaattgaatctcttctctttcgttaccttcatccacaagaagtataattttaagtagt 44987371  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactt-ttttacccttcatctt 533  Q
    |||| ||||||||||| ||  |||||||||||||||||||||| | |||||||| | | | ||||||||||||| |||||||| ||||||| ||||||||    
T  44987370 tcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattatctcactttttttacctttcatctt 44987271  T
Q  534 ttctaagatacgtat 548  Q
    ||||| |||||||||    
T  44987270 ttctaggatacgtat 44987256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 543
Target Start/End: Complemental strand, 4775994 - 4775787
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctct--ctcgttaccttcattcacaagaagtataattttaagtggt 434  Q
    ||||||| |||||||| |||| ||||||| |||||||  |||||||| |||| |||||  |||| || |||||| ||||| ||||||||||||||||||     
T  4775994 catcattgaaagaactcaacacaaattttgtctaatgccgattaactaaatctcctctttctcgctaacttcatccacaataagtataattttaagtgga 4775895  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttt 534  Q
    | ||||||||||||||   |||||||||||||||||||| ||| ||||||| || ||||| || | ||||||||||||||||||||||||||||||||||    
T  4775894 ttatcgagaaacaattactttgatgcatatctaaaattg-atcatatacatttccactaaattatcacaacattgtctcacttttttacccttcatcttt 4775796  T
Q  535 tctaagata 543  Q
    |||| ||||    
T  4775795 tctaggata 4775787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 398 - 562
Target Start/End: Original strand, 10037845 - 10038009
Alignment:
Q  398 gttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtt 497  Q
    |||||||| || ||| ||| |||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||| | | | ||    
T  10037845 gttacctttatacacgagatgtattattttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaatt 10037944  T
Q  498 tttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    ||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||    
T  10037945 ttcgcaacattgtctcacttttttacccttcatcttttctaggatacatatatgtgaaatatctt 10038009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 291 - 560
Target Start/End: Complemental strand, 40217808 - 40217537
Alignment:
Q  291 ataaaccataatatattttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac 390  Q
    |||||||||| |||||||||||||||| ||| || | ||||| |||||| || |||    || |||| |||||||||||||||||| |||||||||||||    
T  40217808 ataaaccatattatattttcatatgttgggatatcgcgagaaacatcattataaaa----ctcaacacaaattttatctaatgttgtttaactgaatcac 40217713  T
Q  391 ct--ctctcgttaccttcattcacaagaagtataa----ttttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctataca 484  Q
     |  |||||||||||||||| || || || || ||    ||||||||| || ||| |||||||||| ||  || |||||  |||||||||||| ||||||    
T  40217712 atttctctcgttaccttcatccaaaaaaaataaaaatatttttaagtgttt-atcaagaaacaattctaccgacgcatacataaaattgaatcatataca 40217614  T
Q  485 tctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatc 560  Q
    ||| |||| | |||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||| |||||||    
T  40217613 tctttactgaatttttataacattgtctcacttttttacccttcatctttttctaggatatgtatatgtgaagtatc 40217537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 341 - 556
Target Start/End: Original strand, 28101934 - 28102147
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataattttaagtggttcatcg 440  Q
    ||||||| ||| ||||||||||||| | ||||||||||||| | |||  | ||||| ||||||||||  | ||| ||||| || ||||||||||||||||    
T  28101934 attaaaataacataacataaattttgtttaatgttgattaattaaatatcttctcttgttaccttcaacctcaaaaagta-aagtttaagtggttcatcg 28102032  T
Q  441 agaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaag 540  Q
    ||||||||||||| | || ||||| |||||||||||  |||||||||| ||| | |||| | ||||| |||||| |||||||||||||||||||| ||||    
T  28102033 agaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataacatcgtctca-ttttttacccttcatcttttataag 28102131  T
Q  541 atacgtatatgttaag 556  Q
     ||||||| |||||||    
T  28102132 ttacgtatctgttaag 28102147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 341 - 475
Target Start/End: Complemental strand, 1052505 - 1052368
Alignment:
Q  341 attaaaagaacttaacataaattttatctaatgttgattaact-gaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggttca 437  Q
    |||||||||||| |||| ||||||||||||||||||||||||| ||  |||  |||||||||||||||||| |||||||| ||||||||||||||||| |    
T  1052505 attaaaagaactcaacacaaattttatctaatgttgattaactagatccacctctctctcgttaccttcatccacaagaaatataattttaagtggttaa 1052406  T
Q  438 tcgagaaacaattttattgatgcatatctaaaattgaa 475  Q
    ||||||||||||| || |||||||||| ||||||||||    
T  1052405 tcgagaaacaattctagtgatgcatatgtaaaattgaa 1052368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 354 - 562
Target Start/End: Complemental strand, 24917712 - 24917513
Alignment:
Q  354 aacataaattttatctaatgttgattaactgaatcacctctctcg--ttaccttcattcacaagaagtataattttaagtggttcatcgagaaacaattt 451  Q
    |||| |||||||||| || ||||||||| ||||||| |||||||   |||||||||| || |||||| |||||||||||||||||||||||||||||||     
T  24917712 aacacaaattttatccaacgttgattaattgaatcatctctctctcattaccttcatccataagaagaataattttaagtggttcatcgagaaacaattc 24917613  T
Q  452 tattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatg 551  Q
    || | ||| ||||||||||||||||| |  |||||||           |||||||| ||||||||||||| |||||||||||||||| ||||||||| ||    
T  24917612 tactaatgtatatctaaaattgaatctttaacatctc-----------tacaacatcgtctcacttttttccccttcatcttttctaggatacgtatctg 24917524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 562
Target Start/End: Original strand, 47922951 - 47923093
Alignment:
Q  422 aattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcactttttt 521  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||  ||||||||  ||||||||||||||| | ||||||| ||    
T  47922951 aattttaactggttcatcaagaaacaattttattgatgcgtatctaaaattgaatcatatggatctctacagagtttttacaacattatgtcactttgtt 47923050  T
Q  522 acccttca--tcttttctaagatacgtatatgttaagtatctt 562  Q
    || |||||  | |||| ||||||| ||| |||| |||||||||    
T  47923051 actcttcattttttttttaagatatgtaaatgtgaagtatctt 47923093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 339 - 543
Target Start/End: Original strand, 35823518 - 35823714
Alignment:
Q  339 tcattaaaagaacttaacataaattttatctaatgttgattaactgaatcac--ctctctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    |||||||||||||| |||| ||||||| | ||||||||||||| |||||| |  ||||||||||| |||||| |||||| |          || |||||     
T  35823518 tcattaaaagaactcaacacaaattttgtataatgttgattaattgaatctcttctctctcgttaacttcatccacaagta----------aaatggttt 35823607  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttc 536  Q
    |||||||||||||| || | || |||||||||||||||||  ||||||| || | ||  |||| |||||||||||||||||| |||||||||||||||||    
T  35823608 atcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttacccttcatcttttc 35823707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 477
Target Start/End: Original strand, 7208441 - 7208583
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttaccttcattcacaagaagtataattttaagtggt 434  Q
    |||||||||||| ||| |||| || |||||||||| ||||||||||| ||| || ||||||  |||  |||||| ||||||||||||||||| |||||||    
T  7208441 catcattaaaaggactcaacaaaatttttatctaaagttgattaactaaattacttctctcttgttgacttcatccacaagaagtataatttcaagtggt 7208540  T
Q  435 tcatcgagaaacaattttattgatgcatatctaaaattgaatc 477  Q
    | ||||| |||||||| ||||||||||  ||| ||||||||||    
T  7208541 ttatcgaaaaacaattctattgatgcacgtctgaaattgaatc 7208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 305 - 432
Target Start/End: Original strand, 2242773 - 2242899
Alignment:
Q  305 attttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctc--gttac 402  Q
    ||||||||||||| ||| || ||||||| ||||   |||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||  | ||     
T  2242773 attttcatatgttgggatatcgagagaaacatc---attaaaagaactcaacacaaattttatctaatattgattaactgaatcatctctctcttgctat 2242869  T
Q  403 cttcattcacaagaagtataattttaagtg 432  Q
     |||||  ||||||||||||||||||||||    
T  2242870 gttcatctacaagaagtataattttaagtg 2242899  T

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Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 25059457 - 25059558
Alignment:
Q  337 catcattaaaagaacttaacataaattttatctaatgttga-ttaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtgg 433  Q
    |||||| ||||||||| |||| ||||||||||||||||||| |||  |||||| ||||  ||||||||||||||  || ||||| |||||||||||||||    
T  25059457 catcatcaaaagaactcaacacaaattttatctaatgttgatttagttgaatctcctccatctcgttaccttcacccataagaaatataattttaagtgg 25059556  T
Q  434 tt 435  Q
    ||    
T  25059557 tt 25059558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 24913890 - 24913828
Alignment:
Q  500 tacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||| ||| || ||||||    
T  24913890 tacaacatcgtctcacttttttccccttcatcttttctaggatacgtatctgtgaaatatctt 24913828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 571
Target Start/End: Original strand, 2242914 - 2243015
Alignment:
Q  471 ttgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctttgtctat 569  Q
    ||||||| ||||||||| || ||| |||||| |||||||||||||||||||||  |||||| |||| || ||||  ||||||| ||||||| |||| |||    
T  2242914 ttgaatcatatacatctataataaatttttataacattgtctcacttttttactgttcatcattttttaggatatatatatgtgaagtatcattgtgtat 2243013  T
Q  570 ct 571  Q
    ||    
T  2243014 ct 2243015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 559
Target Start/End: Complemental strand, 21619729 - 21619539
Alignment:
Q  369 taatgttgattaactgaatcacctctctcgttaccttcattcacaagaagtataa-ttttaagtggttcatcgagaaacaattttattgatgcatatc-t 466  Q
    ||||||||||| | |||||   ||||||| |||||||||| ||||| ||  |||| |||| | || || ||||| |||||||| || | || |||||| |    
T  21619729 taatgttgattgattgaattttctctctcattaccttcatccacaaaaaaaataatttttcattgattaatcgaaaaacaattatactcattcatatctt 21619630  T
Q  467 aaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtat 559  Q
    ||||||||||| |||||||||  | | | |||| ||||  ||||||||||||||  |||||| ||||||| ||||||| ||| ||| ||||||    
T  21619629 aaaattgaatcatatacatcttcattgaattttcacaaagttgtctcacttttt--cccttcgtcttttccaagatacatatttgtaaagtat 21619539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 45661911 - 45661842
Alignment:
Q  466 taaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatctttt 535  Q
    |||||||||||| ||||| |  | ||| | |||| ||||||||||||||||||||||| |||||||||||    
T  45661911 taaaattgaatcatatacgttcccactgaattttcacaacattgtctcacttttttactcttcatctttt 45661842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 562
Target Start/End: Original strand, 53014846 - 53014935
Alignment:
Q  470 attgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    ||||| || ||||||||| || | | |||||||||||||||||||||||||||    |||| |||| || ||||||||| ||| |||||||||    
T  53014846 attgagtcatatacatctataatgaatttttacaacattgtctcactttttta---atcattttttttaggatacgtatttgtgaagtatctt 53014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 562
Target Start/End: Original strand, 4110239 - 4110334
Alignment:
Q  466 taaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatctt 562  Q
    |||||||||||  ||||||| || ||| | |||| ||||||||||  ||||||||||| |||||||||||  ||||||| ||| | | |||||||||    
T  4110239 taaaattgaata-tatacatttccacttaattttcacaacattgtaccacttttttactcttcatcttttaaaagatacatatctttaaagtatctt 4110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 305 - 562
Target Start/End: Complemental strand, 8134 - 7879
Alignment:
Q  305 attttcatatgttaggaaattgagagaagcatcatcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctctctcgttacct 404  Q
    ||||||||||||| |||  ||||||||| |||| |   |||||||||  |||| |||||||||||||| ||||||||||||||||| ||||||| ||| |    
T  8134 attttcatatgttgggatgttgagagaaacatcgt---taaaagaacccaacacaaattttatctaattttgattaactgaatcacatctctcgctacgt 8038  T
Q  405 tcattcacaagaagtataattttaagtggttcatcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaa 504  Q
    |||| ||||||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||| || | | |||||||||    
T  8037 tcatccacaagaagtatactttttagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaa 7938  T
Q  505 cattgtctcacttttttacccttcatc-ttttctaagatacgtatatgttaagtatctt 562  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||| | ||| |||||||||    
T  7937 cattgtctcacttttttactcttcatctttttctaggatacgtgtctgtgaagtatctt 7879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 339 - 561
Target Start/End: Complemental strand, 6362 - 6137
Alignment:
Q  339 tcattaaaagaacttaacataaattttatctaatgttgattaactgaatcacctc--tctcgttaccttcattcacaagaagtataattttaagtggttc 436  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||  |||||||||||||||||||||||||||||    
T  6362 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcacctcactctcgttacatttgttcacaagaagtataattttaagtggttc 6263  T
Q  437 atcgagaaacaattttattgatgcatatctaaaattgaatcctatacatctctactaagtttttacaacattgtctcacttttttacccttcatcttttc 536  Q
    ||| | |||||||| || | ||||||||||| ||||||||| ||||||||||||   | | ||| |||||||||||||||||||||| |||||||||||     
T  6262 atcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcacttttttactcttcatcttttt 6163  T
Q  537 taa-gatacgtatatgttaagtatct 561  Q
     || ||||||||||||| || |||||    
T  6162 gaaggatacgtatatgtgaaatatct 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 561
Target Start/End: Complemental strand, 10106 - 10046
Alignment:
Q  501 acaacattgtctcacttttttacccttcatcttttctaagatacgtatatgttaagtatct 561  Q
    ||||||||||||||||||||||||||| || ||||||| |||||| || ||| ||||||||    
T  10106 acaacattgtctcacttttttaccctttatattttctaggatacgcatctgtgaagtatct 10046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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