View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_32 (Length: 285)
Name: NF2683_low_32
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 106889 - 107145
Alignment:
| Q |
19 |
tctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaatcttcaaagtagttaaatgcaagttcaaga |
118 |
Q |
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| T |
106889 |
tctgcatgattttttacaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaatcttcaaagtagttaaatgcaagttcaaga |
106988 |
T |
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| Q |
119 |
aaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttgtatac |
218 |
Q |
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| T |
106989 |
aaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttgtatac |
107088 |
T |
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| Q |
219 |
ccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
275 |
Q |
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| T |
107089 |
ccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
107145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 260
Target Start/End: Original strand, 113565 - 113792
Alignment:
| Q |
34 |
acaatatttgatcatctcttcattttgatctttctttgacctttgtggattgtaatcttcaaagtagttaaatgcaagttcaagaaaacttagatcatta |
133 |
Q |
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| T |
113565 |
acaatattggatcatctcttcattttgatctttcttttacctttgtggattataatcttcaaagtagtaaaatgcaagttcaagaaaacttagatcatta |
113664 |
T |
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| Q |
134 |
ttatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatg |
233 |
Q |
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| T |
113665 |
ttatccttgcaaaccttttgatataattgttccaagacaaaaaatggaagctgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatg |
113764 |
T |
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| Q |
234 |
atgttgtgaacatgt-aatccttttccc |
260 |
Q |
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| T |
113765 |
atgttgtgaacatgtaaatccttttccc |
113792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 142771 - 142686
Alignment:
| Q |
185 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattc |
270 |
Q |
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| T |
142771 |
tgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattc |
142686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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