View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_34 (Length: 269)
Name: NF2683_low_34
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 46037853 - 46037921
Alignment:
| Q |
57 |
tgttctccttcaaaacaacaacatcaagagaactaatcagaaaataatatgttcaacaacgattgaagt |
125 |
Q |
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| T |
46037853 |
tgttctccttcaaaacaacaacatcaagagaactaatcagaaaataatatgttcaacaacgattaaagt |
46037921 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 46038006 - 46038046
Alignment:
| Q |
210 |
cgaagagaggggaaagtgagcgctggatgcagaggtttatc |
250 |
Q |
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| T |
46038006 |
cgaagagaggggaaagtgagcgctggatgcagaggtttatc |
46038046 |
T |
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