View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_35 (Length: 265)
Name: NF2683_low_35
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 3907678 - 3907818
Alignment:
| Q |
114 |
aacaaatatttcatctcccaatttataagtcaatacatctaatattgatatttctacacatat--ttgcagctcgtggaccagaaatcatcatcgaatgg |
211 |
Q |
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| T |
3907678 |
aacaaatatttcatctcctaatttataagttaatacatctgatattgatatttctgcacatatatttgcagctcgtggacctgaaattgtcgtcgaatgg |
3907777 |
T |
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| Q |
212 |
ccaacaaggatgaaaatagcaattggaatcacaaatggtct |
252 |
Q |
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| T |
3907778 |
ccaacaaggatgaaaatagctattggaatcactaatggtct |
3907818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3924025 - 3924102
Alignment:
| Q |
1 |
tgatcttggttcaatggtccatatcacgtacttgtgtttggtgtgtggtttcgtgactcctgagaatctgaaacttat |
78 |
Q |
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| T |
3924025 |
tgatcttggttcaatggtccatatcacgtacttgtgtttggcgtgtggtttcgtgactcctgagaatctgaaacttat |
3924102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 3907602 - 3907652
Alignment:
| Q |
80 |
ttgaaattagaatgcatagctaatcttattagttaacaaatatttcatctc |
130 |
Q |
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| T |
3907602 |
ttgaaattagaatgcatagctagtcttattagttaacaaatatttcatctc |
3907652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 3923288 - 3923365
Alignment:
| Q |
86 |
ttagaatgcatagctaatcttattagttaacaaatatttcatctcccaatttataagtcaatacatctaatattgatat |
164 |
Q |
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| T |
3923288 |
ttagaatgcattgctaatc-tattagttaataagtcttttatctcttaatttataagccaatacttctgatattgatat |
3923365 |
T |
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