View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_36 (Length: 260)
Name: NF2683_low_36
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 29122479 - 29122655
Alignment:
| Q |
49 |
ggaggaacaaaatggatggattggatgataatgggtggataaaacaattcattatcaatccactaaaaattattttaaaaaatttaagaattagttactc |
148 |
Q |
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| T |
29122479 |
ggagtaacaaaatggatggattggatgataatgggtggataaaacaatccattatcgatccactaaaaattgttttaaaaaatttaagaattagttactg |
29122578 |
T |
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| Q |
149 |
atctgatcactctattttcaccaatttgtagaattaatccccgtattttaaaatttaatagttttggtcctccttcg |
225 |
Q |
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| T |
29122579 |
atctgatcactctattttcaccaatttgtagaattagtccctgtattttaaaatttaatagttttggtcctccttcg |
29122655 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 6216217 - 6216275
Alignment:
| Q |
160 |
ctattttcaccaatttgtagaattaatccccgtattttaaaatttaatagttttggtcc |
218 |
Q |
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| T |
6216217 |
ctattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtcc |
6216275 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 3577836 - 3577779
Alignment:
| Q |
158 |
ctctattttcaccaatttgtagaattaatccccgtattttaaaatttaatagttttgg |
215 |
Q |
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| T |
3577836 |
ctctattttcaccattttgaagaattggtccccctattttaaaatttgacagttttgg |
3577779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 42552558 - 42552603
Alignment:
| Q |
158 |
ctctattttcaccaatttgtagaattaatccccgtattttaaaatt |
203 |
Q |
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| T |
42552558 |
ctctattttcaccattttgtagaattggtccctgtattttaaaatt |
42552603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 15061471 - 15061528
Alignment:
| Q |
161 |
tattttcaccaatttgtagaattaatccccgtattttaaaatttaatagttttggtcc |
218 |
Q |
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| T |
15061471 |
tattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggtcc |
15061528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 6198147 - 6198103
Alignment:
| Q |
159 |
tctattttcaccaatttgtagaattaatccccgtattttaaaatt |
203 |
Q |
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| T |
6198147 |
tctattttcaccattttgtagaattggtccccctattttaaaatt |
6198103 |
T |
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