View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_37 (Length: 256)
Name: NF2683_low_37
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 8700013 - 8699778
Alignment:
| Q |
19 |
attctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnnngttttaaataagta |
118 |
Q |
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| T |
8700013 |
attctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagta |
8699914 |
T |
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| Q |
119 |
ttttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgcctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8699913 |
ttttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcctt |
8699814 |
T |
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| Q |
219 |
acccgacttaaggaattagtctatacactttgcaca |
254 |
Q |
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|||||| ||||||||||||| ||||||||||||||| |
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| T |
8699813 |
acccgatttaaggaattagtttatacactttgcaca |
8699778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
114 |
aagtattttctattctatcctagaatacttaatgagatggt |
154 |
Q |
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| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 52773602 - 52773527
Alignment:
| Q |
19 |
attctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
94 |
Q |
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||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
52773602 |
attctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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