View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_39 (Length: 251)
Name: NF2683_low_39
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_39 |
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| [»] scaffold0831 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0831 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 1265 - 1503
Alignment:
| Q |
13 |
aatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggttcac |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1265 |
aatatatcaccattctttcgtacgcctataggacgctcaacactaggcaaagggccaacaatgaagagttttgtccacgattcactaacgccaggttcac |
1364 |
T |
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| Q |
113 |
ccaaaacatatatttgaaaataagatgtctttacatgctcaaagattgtagaaacaaactcatttatcaccactaagttaaagtatacatgcacccaatc |
212 |
Q |
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| T |
1365 |
ccaaaacatatatgtgaaaataagttgtctttacatgctcaaagattatagaaacaaactcatttatcaccactaagttagtgtatagatgcacccaatt |
1464 |
T |
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| Q |
213 |
atcggtataatttcctttcatatagaagggtaagagtgt |
251 |
Q |
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| T |
1465 |
atcggaataatttcctttcgtatataagggtaaaagtgt |
1503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 1327388 - 1327201
Alignment:
| Q |
10 |
aagaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggtt |
109 |
Q |
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||||||||||| || || |||| | | |||||||||||||| || | ||| ||||| || |||||||||||||||||||| ||||| ||||| ||| ||| |
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| T |
1327388 |
aagaatatatcgcctttttttcctgctccaataggacgctccacgccaggcaagggtccgacaatgaagagtttagtccatgattctctaacaccaagtt |
1327289 |
T |
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| Q |
110 |
cacccaaaacatatatttgaaaataagatgtctttacatgctcaaagattgtagaaacaaactcatttatcaccactaagttaaagta |
197 |
Q |
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| T |
1327288 |
cgcccaaaacatatatgtgaaaagaagatgtctttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagta |
1327201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 4877927 - 4877786
Alignment:
| Q |
10 |
aagaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggtt |
109 |
Q |
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|||||||||||||| || |||| | | |||| ||||||||| || ||||| ||||| || | ||| |||||||||||||| ||||| ||||| ||| ||| |
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| T |
4877927 |
aagaatatatcacctttttttcctgctccaacaggacgctccacgctaggcaagggtccgataataaagagtttagtccatgattctctaacaccaagtt |
4877828 |
T |
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| Q |
110 |
cacccaaaacatatatttgaaaataagatgtctttacatgct |
151 |
Q |
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| T |
4877827 |
cgcccaaaacatatatgtgaaaagaagttgtctttacatgct |
4877786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 44186235 - 44186096
Alignment:
| Q |
10 |
aagaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggtt |
109 |
Q |
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|||||||||||| | || |||| | | |||| ||||| ||| || ||||| ||||| || ||||| |||||||||||||| ||||| ||||| ||| || |
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| T |
44186235 |
aagaatatatcaactttttttccttctccaacaggacactccacgctaggcaagggtccgacaataaagagtttagtccatgattctctaacaccaaatt |
44186136 |
T |
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| Q |
110 |
cacccaaaacatatatttgaaaataagatgtctttacatg |
149 |
Q |
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| T |
44186135 |
ctcccaaaacatatatgtgaaaagaagctgtctttacatg |
44186096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 48741955 - 48742013
Alignment:
| Q |
37 |
ccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattc |
95 |
Q |
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| T |
48741955 |
ccaataggatgttcaatgctaggtaagggtccaaaaatgaagagtttagtccaagattc |
48742013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 26532472 - 26532292
Alignment:
| Q |
10 |
aagaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggtt |
109 |
Q |
| |
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||||||| |||||| || |||| | | |||| ||||||| |||| |||| ||||| || || ||||||||||||||||| ||||| ||| ||||||| |
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| T |
26532472 |
aagaatagatcacctttttttcctgctccaagaggacgccaaacattaggcaagggtccgactatgaagagtttagtccatgattctctatgaccaggtt |
26532373 |
T |
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| Q |
110 |
cacccaaaacatatatttgaaaataagatgtctttacatgctcaaagattgtagaaacaaactcatttatcaccactaagt |
190 |
Q |
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|||||||||||||||| |||||| | |||||||||||||| ||||| ||| ||||||| |||||| |||||| |||| |
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| T |
26532372 |
cacccaaaacatatatgtgaaaagctgctgtctttacatgctttaagatcatagcaacaaacccatttaacaccaccaagt |
26532292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 6432721 - 6432581
Alignment:
| Q |
11 |
agaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggttc |
110 |
Q |
| |
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|||||| |||||| ||||||| || ||||||||||| | || ||||||||||| || |||||||||||||| ||||| ||||| | || ||| |||| |
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| T |
6432721 |
agaatagatcacccttctttcctattccaataggacgacctacgctaggtaagggtccgacaatgaagagtttggtccatgattctttgacaccaagttc |
6432622 |
T |
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| Q |
111 |
acccaaaacatatatttgaaaataagatgtctttacatgct |
151 |
Q |
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| T |
6432621 |
acacaaaacatatatgtgaaaagaagtcgtctttgcatgct |
6432581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 25628263 - 25628211
Alignment:
| Q |
67 |
ccaacaatgaagagtttagtccacgattcactaacgccaggttcacccaaaac |
119 |
Q |
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|||| |||||||||||||||||| |||||||| || ||| ||||||| ||||| |
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| T |
25628263 |
ccaataatgaagagtttagtccatgattcactcacaccaagttcacctaaaac |
25628211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 33494 - 33602
Alignment:
| Q |
10 |
aagaatatatcaccattctttcgtacgccaataggacgctcaacactaggtaaggggccaacaatgaagagtttagtccacgattcactaacgccaggtt |
109 |
Q |
| |
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|||||||||||||||||||||| | ||||||||| |||| | | |||||| || |||| ||| |||||||||||||| || || | || ||| ||| |
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| T |
33494 |
aagaatatatcaccattctttccctccccaataggatgctcgatgcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagtt |
33593 |
T |
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| Q |
110 |
cacccaaaa |
118 |
Q |
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| T |
33594 |
cacccaaaa |
33602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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