View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_40 (Length: 246)

Name: NF2683_low_40
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_40
NF2683_low_40
[»] chr1 (2 HSPs)
chr1 (122-226)||(5101075-5101179)
chr1 (41-121)||(5100943-5101023)
[»] scaffold1052 (2 HSPs)
scaffold1052 (122-228)||(580-686)
scaffold1052 (1-121)||(408-528)
[»] chr3 (2 HSPs)
chr3 (122-217)||(32356115-32356210)
chr3 (1-121)||(32355942-32356063)
[»] chr2 (2 HSPs)
chr2 (122-217)||(6182342-6182437)
chr2 (39-121)||(6182208-6182290)
[»] scaffold0268 (1 HSPs)
scaffold0268 (146-201)||(20445-20500)
[»] chr7 (1 HSPs)
chr7 (147-201)||(10200422-10200476)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 5101075 - 5101179
Alignment:
Q  122 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggatat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101075 tataactataaacatatggtttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggatat 5101174  T
Q  222 acgtc 226  Q
    |||||    
T  5101175 acgtc 5101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 5100943 - 5101023
Alignment:
Q  41 actttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100943 actttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 5101023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 580 - 686
Alignment:
Q  122 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggatat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  580 tataactataaacatatggtttttcaatttcatctcattcctttgttatttcaatcaaattaaactatagaaatcattaaggccaatcattaatggatat 679  T
Q  222 acgtctt 228  Q
    |||||||    
T  680 acgtctt 686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 408 - 528
Alignment:
Q  1 attgatcttatgatagtctcttcagactagannnnnnnccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttc 100  Q
    |||||||||||||||||||||||| |  |||       ||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||    
T  408 attgatcttatgatagtctcttcacataagatttttttccactttcttctaccaccgttatattgtctatgtgtgtgcctttttccaaaatccatggttc 507  T
Q  101 caagttccaacaaactctaca 121  Q
    ||| |||||||||||||||||    
T  508 caaattccaacaaactctaca 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 32356115 - 32356210
Alignment:
Q  122 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32356115 tataactataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg 32356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 32355942 - 32356063
Alignment:
Q  1 attgatcttatgatagtctcttcagactagannnnnnn-ccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggtt 99  Q
    |||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32355942 attgatcttatgatagtctcttcacactagattttttttccactttcttctaccaccgttatcttgtctatgtgtgtgcctttttccagaaaccatggtt 32356041  T
Q  100 ccaagttccaacaaactctaca 121  Q
    ||||||||||||||||||||||    
T  32356042 ccaagttccaacaaactctaca 32356063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 6182342 - 6182437
Alignment:
Q  122 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6182342 tataactataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg 6182437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 6182208 - 6182290
Alignment:
Q  39 ccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 121  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6182208 ccactttcttctaccaccgttatcttgtctatgtgtgtgtctttttccagaaaccatggttccaagttccaacaaactctaca 6182290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 20445 - 20500
Alignment:
Q  146 caatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaa 201  Q
    |||||||||| | |||||||| |||||||| ||||||  |||||||||||||||||    
T  20445 caatttcatccccttcctttgttatctcaaacaaattggattatagaaatcattaa 20500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 10200476 - 10200422
Alignment:
Q  147 aatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattaa 201  Q
    ||||||||| | |||||||| |||||||| ||||||  |||||||||||||||||    
T  10200476 aatttcatccccttcctttgttatctcaaacaaattggattatagaaatcattaa 10200422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University