View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_41 (Length: 246)

Name: NF2683_low_41
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_41
NF2683_low_41
[»] chr2 (8 HSPs)
chr2 (1-94)||(31438492-31438585)
chr2 (118-210)||(31432053-31432146)
chr2 (1-86)||(31435434-31435519)
chr2 (118-210)||(31435615-31435708)
chr2 (1-85)||(31431874-31431958)
chr2 (1-86)||(31424543-31424629)
chr2 (118-154)||(31438609-31438645)
chr2 (195-237)||(31432162-31432204)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 31438492 - 31438585
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaaccttgacc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31438492 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaaccttgacc 31438585  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 31432053 - 31432146
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagt-atttattctcttccttgagtcaaaataaagataataaaacttccatatttgtctctataa 210  Q
    |||||||||| || ||||||| | |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  31432053 ttaataagattatttatgcacttttatagtagttatttattctcttcattgagtcaaaataaagataataaaacttctatatttgtctctataa 31432146  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31435434 - 31435519
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgcaa 86  Q
    ||||||||||||||| |||| ||||| |||  |||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  31435434 tattagtcattgcatcaagcgtagattaataaatgagatttgatgtcaaatttaattggagcatatattaaatatatttaatgcaa 31435519  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 31435615 - 31435708
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagt-atttattctcttccttgagtcaaaataaagataataaaacttccatatttgtctctataa 210  Q
    |||||||||| || ||||||||| | || |||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||    
T  31435615 ttaataagattatttatgcacatttgtagtagttatttattctcttcattgagtcaaaataaagataatataacttctatatttgtctctataa 31435708  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31431874 - 31431958
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaatttaatttgaccatatattaaatatatttaatgca 85  Q
    ||||||||||||||| | |  ||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||    
T  31431874 tattagtcattgcatcacgggtagataaatggatgagatttgatatcaaatttaatttaaccatatatcaaatatatttaatgca 31431958  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31424543 - 31424629
Alignment:
Q  1 tattagtcattgcataaagcatagataaatggatgagatttgatgttaaa-tttaatttgaccatatattaaatatatttaatgcaa 86  Q
    ||||| |||||| || |||||||||||||  |||| ||||| |||| ||| ||| |||||||||||||||||||||||| |||||||    
T  31424543 tattattcattggatcaagcatagataaacagatgcgatttaatgtcaaaatttgatttgaccatatattaaatatattgaatgcaa 31424629  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 31438609 - 31438645
Alignment:
Q  118 ttaataagataatgtatgcacatgtataatagtattt 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  31438609 ttaataagataatgtatgcacatgtataatagtattt 31438645  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 31432162 - 31432204
Alignment:
Q  195 atatttgtctctataaatagcctctaactgatgtttcatcttc 237  Q
    ||||||||||||||||||| ||||||||||||| | |||||||    
T  31432162 atatttgtctctataaatatcctctaactgatggtgcatcttc 31432204  T

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