View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_48 (Length: 241)

Name: NF2683_low_48
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_48
NF2683_low_48
[»] chr1 (4 HSPs)
chr1 (9-241)||(33286868-33287097)
chr1 (89-204)||(33141043-33141158)
chr1 (89-204)||(33159663-33159778)
chr1 (89-204)||(33182507-33182622)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 33286868 - 33287097
Alignment:
Q  9 gaagaatatgcaacaattgaacataacacatagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286868 gaagaaaatgcaacaattgaacataacacatagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaa 33286967  T
Q  109 taaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaaggcgagagcaaagatgaaagaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |    
T  33286968 taaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccagcaactttatgaatctcaaggtgagagcaaagatgaaagga 33287067  T
Q  209 aggagcaaccttcttatcatgatgttcattaaa 241  Q
    |||||||||||||||   |||||||||||||||    
T  33287068 aggagcaaccttctt---atgatgttcattaaa 33287097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 33141158 - 33141043
Alignment:
Q  89 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 188  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||| | ||||||||| ||||| ||| |||| ||| |||||||||||    
T  33141158 atggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaattttcccagcaacattaggaatctcaagg 33141059  T
Q  189 cgagagcaaagatgaa 204  Q
     ||||||||| |||||    
T  33141058 tgagagcaaatatgaa 33141043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 33159778 - 33159663
Alignment:
Q  89 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 188  Q
    |||||| ||||||||| | ||| ||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||||||||| ||| |||||||||||    
T  33159778 atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg 33159679  T
Q  189 cgagagcaaagatgaa 204  Q
     ||||||||| |||||    
T  33159678 tgagagcaaatatgaa 33159663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 33182622 - 33182507
Alignment:
Q  89 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 188  Q
    |||||| ||||||||| | ||| ||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||||||||| ||| |||||||||||    
T  33182622 atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg 33182523  T
Q  189 cgagagcaaagatgaa 204  Q
     ||||||||| |||||    
T  33182522 tgagagcaaatatgaa 33182507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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