View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_5 (Length: 568)
Name: NF2683_low_5
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 151 - 354
Target Start/End: Complemental strand, 44911828 - 44911625
Alignment:
| Q |
151 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44911828 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgaaaattaatagaaacgagaagatggaagatagatgaat |
44911729 |
T |
|
| Q |
251 |
ggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttgataaacatgatgatgctttgaaagcat |
350 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44911728 |
ggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgtcatggtgtgaaataattttgataaacatgatgatgctttgaaagcat |
44911629 |
T |
|
| Q |
351 |
aggc |
354 |
Q |
| |
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|||| |
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| T |
44911628 |
aggc |
44911625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 141 - 324
Target Start/End: Original strand, 3768993 - 3769176
Alignment:
| Q |
141 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
240 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
3768993 |
ttgacacaatccatgggaagaaggtatgaaacaagaggggttggtgttgctgtgatgacgatgaaccaaatgaaaattaatagaaacgagaagatggaag |
3769092 |
T |
|
| Q |
241 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
324 |
Q |
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| T |
3769093 |
atagatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtgatggtgtgaaataattttga |
3769176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44911937 - 44911826
Alignment:
| Q |
1 |
ttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccatatgattgtttgttgccactctttacacaatcccactat |
100 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
44911937 |
ttccaaattctttggcaaggctattttgttggtataatagttttatttttataatgtacc--atgattgtttgttgccgctctttacacaatcccactat |
44911840 |
T |
|
| Q |
101 |
caaagaaacaacca |
114 |
Q |
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|||||||||||||| |
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| T |
44911839 |
caaagaaacaacca |
44911826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 3768575 - 3768615
Alignment:
| Q |
102 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
142 |
Q |
| |
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| T |
3768575 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
3768615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 3928724 - 3928541
Alignment:
| Q |
141 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
240 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
3928724 |
ttgacacaatctatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
3928625 |
T |
|
| Q |
241 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
324 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3928624 |
atagatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
3928541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3929042 - 3928981
Alignment:
| Q |
1 |
ttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat |
62 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929042 |
ttccaaattctttggcaaggctattttgttgggataatagttttatttttataatgtaccat |
3928981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 6354074 - 6353891
Alignment:
| Q |
141 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
240 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
6354074 |
ttgacacaatccatgggaagaaggtatgaaacaagatgggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
6353975 |
T |
|
| Q |
241 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttga |
324 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
6353974 |
atagatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctctctgatggtgtgaaataattttga |
6353891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6354602 - 6354454
Alignment:
| Q |
1 |
ttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat-----atgattgtttgttgccactctttacacaatccc |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||| |||||||||||||||| |
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| T |
6354602 |
ttccaaattctttggcaagactattttgttgggataataattttatttttataatttataatgtaccatgattgtttgttgccgctctttacacaatccc |
6354503 |
T |
|
| Q |
96 |
-actatcaaa-gaaacaaccagcaaagagttttgttgcaaatgcttgtt |
142 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6354502 |
cactatcaaaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
6354454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 30372845 - 30372929
Alignment:
| Q |
215 |
aattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
30372845 |
aattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct |
30372929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 36501281 - 36501377
Alignment:
| Q |
228 |
gagaagatggaaga-tagatgaatggcatgaacggtaaa-ttggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttg |
323 |
Q |
| |
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|||||||||||||| | ||||||||||||||| | |||| ||||| |||||| ||||||| ||| |||| |||| || ||||||||||||| |||||| |
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| T |
36501281 |
gagaagatggaagaatcgatgaatggcatgaaggataaagttgga-gttttagggtagttgaatccctggccctttgcgatggtgtgaaatgattttg |
36501377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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