View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_55 (Length: 206)
Name: NF2683_low_55
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_55 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 138773 - 138956
Alignment:
| Q |
7 |
agtagcaaaggctttggtaatatcaattttcaaagcaatgttccctgcatatgacttcttatggagaagattaatagcttcagaggctaaacaaagacaa |
106 |
Q |
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| T |
138773 |
agtatcaaaggctttggtaatatcaattttcaaagcaatgttccctgcatatgacttcttatggagaagattaatagcttctgaggctaaacaaagacaa |
138872 |
T |
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| Q |
107 |
tcttttatattccttccttgaataaagcctttttggttctttgagataattgtaggaagaatttgtgctaacctgtcagcaatg |
190 |
Q |
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| T |
138873 |
tcttttatattccttccctgaataaagcctttttggttctttgagataattgtaggaagaatttgtgctaacctgtcagcaatg |
138956 |
T |
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Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 3564690 - 3564873
Alignment:
| Q |
7 |
agtagcaaaggctttggtaatatcaattttcaaagcaatgttccctgcatatgacttcttatggagaagattaatagcttcagaggctaaacaaagacaa |
106 |
Q |
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| T |
3564690 |
agtatcaaaggctttggtaatatcatttttcaaagcaatgttccctgcatatgacttcttatgtagaagattaatagcttctaaggctaaacaaagacaa |
3564789 |
T |
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| Q |
107 |
tcttttatattccttccttgaataaagcctttttggttctttgagataattgtaggaagaatttgtgctaacctgtcagcaatg |
190 |
Q |
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| T |
3564790 |
tcttttatattccttccctgaataaagcctttttggttctttgagataattgtaggaagaatttgtgctaacctgtcagcaatg |
3564873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 9750813 - 9750948
Alignment:
| Q |
12 |
caaaggctttggtaatatcaattttcaaagcaatgttccctgcatatgacttcttatggagaagattaatagcttcagaggctaaacaaagacaatcttt |
111 |
Q |
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| T |
9750813 |
caaaagctttggtaatgacaattttcagaactatgttccctgcataagtcttcttatgaagatggtttatggcttctgaagctaaacaaaatcagtcttt |
9750912 |
T |
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| Q |
112 |
tatattccttccttgaataaagcctttttggttctt |
147 |
Q |
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| T |
9750913 |
tatatctcttccctgaataaagcctttttgattctt |
9750948 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 28714642 - 28714557
Alignment:
| Q |
83 |
gcttcagaggctaaacaaagacaatcttttatattccttccttgaataaagcctttttggttctttgagataattgtaggaagaat |
168 |
Q |
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| T |
28714642 |
gcttcagaagcaagacaaagacaatccttaatatttcttcctttaatgaaacctttttgattgcttgagataatagttggaagaat |
28714557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 16488274 - 16488189
Alignment:
| Q |
83 |
gcttcagaggctaaacaaagacaatcttttatattccttccttgaataaagcctttttggttctttgagataattgtaggaagaat |
168 |
Q |
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| T |
16488274 |
gcttcagaagcaagacaaagacaatccttaatatttcttcctttaatgaaacctttttgattgcttgagataatagttggaagaat |
16488189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 13141246 - 13141330
Alignment:
| Q |
104 |
caatcttttatattccttccttgaataaagcctttttggttctttgagataattgtaggaagaatttgtgctaacctgtcagcaa |
188 |
Q |
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| T |
13141246 |
caatctcttatgttcctgccttgaacaaaacctctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcaa |
13141330 |
T |
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