View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2683_low_6 (Length: 496)

Name: NF2683_low_6
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2683_low_6
NF2683_low_6
[»] chr6 (17 HSPs)
chr6 (17-486)||(33258004-33258473)
chr6 (200-481)||(33414561-33414840)
chr6 (200-404)||(33269534-33269740)
chr6 (231-429)||(31564920-31565117)
chr6 (337-486)||(33293102-33293251)
chr6 (200-481)||(33395045-33395326)
chr6 (200-327)||(33384018-33384148)
chr6 (261-486)||(33278975-33279194)
chr6 (80-183)||(31565201-31565304)
chr6 (91-171)||(33383785-33383865)
chr6 (383-475)||(28872999-28873091)
chr6 (80-183)||(33414317-33414420)
chr6 (112-187)||(33292802-33292877)
chr6 (247-386)||(33406911-33407049)
chr6 (80-163)||(33351414-33351497)
chr6 (260-386)||(33280357-33280482)
chr6 (146-183)||(33269355-33269392)
[»] scaffold0428 (3 HSPs)
scaffold0428 (18-486)||(2126-2594)
scaffold0428 (261-486)||(15059-15278)
scaffold0428 (260-386)||(13771-13896)
[»] chr2 (2 HSPs)
chr2 (228-486)||(17447703-17447961)
chr2 (112-183)||(17445786-17445857)


Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 33258004 - 33258473
Alignment:
Q  17 cagaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258004 cagaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagct 33258103  T
Q  117 atacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258104 atacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgg 33258203  T
Q  217 accaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258204 accaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacc 33258303  T
Q  317 aatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258304 aatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgc 33258403  T
Q  417 ttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258404 ttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 33258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 200 - 481
Target Start/End: Original strand, 33414561 - 33414840
Alignment:
Q  200 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 299  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||    
T  33414561 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttc 33414659  T
Q  300 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 399  Q
    ||||||||||||||||||||  ||| |||| || || ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  33414660 acttcaattagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccc 33414758  T
Q  400 tttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 481  Q
    |||||  ||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  33414759 tttttcctgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac 33414840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 200 - 404
Target Start/End: Original strand, 33269534 - 33269740
Alignment:
Q  200 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 299  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  33269534 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttc 33269632  T
Q  300 acttcaattagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga 396  Q
    ||||||||||||||||| |||  || || | || ||   |||||||||||||||| ||||  ||||||||||  | || |||||||||||||||||||||    
T  33269633 acttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagaga 33269732  T
Q  397 cccttttt 404  Q
    ||||||||    
T  33269733 cccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 231 - 429
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  231 tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc 330  Q
    |||||||||||||| | |||||||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||| ||||||||     
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  331 gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 429  Q
    || || ||||||||||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 33293102 - 33293251
Alignment:
Q  337 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 436  Q
    |||||||| |||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||  |||| ||||||| |  ||||||||||||||    
T  33293102 tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac 33293201  T
Q  437 cttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 486  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  33293202 cttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt 33293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 200 - 481
Target Start/End: Original strand, 33395045 - 33395326
Alignment:
Q  200 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgt 297  Q
    ||||||||||||||||||| |  |  ||| |||||||| ||||||  ||||||||||||| ||| | |||||||||  ||||||||||||||||||| ||    
T  33395045 acaaactgaacctgtggacaagcagccta-ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagt 33395143  T
Q  298 tcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagac 397  Q
    |||||||||| ||||||   ||| ||| ||||  | || ||| ||||||||||||||||  ||||||| || ||||||||||| ||||| ||||||||||    
T  33395144 tcacttcaatcagaacatagatgcgtgcatcgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagac 33395242  T
Q  398 cctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 481  Q
    ||||| |  | || |||| ||| | |||||||||||||||||  ||||||||    ||||||||||||||||| ||||| ||||    
T  33395243 cctttgttctaaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 200 - 327
Target Start/End: Original strand, 33384018 - 33384148
Alignment:
Q  200 acaaactgaacctgtggac---caaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccg 296  Q
    ||||||||||||| |||||   |||  ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || |    
T  33384018 acaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacag 33384117  T
Q  297 ttcacttcaattagaacaccaatgtgtgaat 327  Q
    |||||||||||||||||||| ||||||||||    
T  33384118 ttcacttcaattagaacaccgatgtgtgaat 33384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 261 - 486
Target Start/End: Original strand, 33278975 - 33279194
Alignment:
Q  261 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 360  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  33278975 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 33279069  T
Q  361 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 460  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  33279070 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 33279168  T
Q  461 tacagtccatcatccctgcacaggtt 486  Q
    ||||||||||| |||| |||| ||||    
T  33279169 tacagtccatcgtcccagcaccggtt 33279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 31565304 - 31565201
Alignment:
Q  80 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 179  Q
    |||||||| ||| |||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  31565304 aaaacgccgcacattaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 31565205  T
Q  180 agag 183  Q
    ||||    
T  31565204 agag 31565201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 33383785 - 33383865
Alignment:
Q  91 ctttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggct 171  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  33383785 ctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatgaaaggct 33383865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  383 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 475  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 33414317 - 33414420
Alignment:
Q  80 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 179  Q
    |||||||| |||||||||| |||| | |||  ||||||||||| |||||||||||| |||||||  |||||||||||||||||| ||||||| |||||||    
T  33414317 aaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtcatccttaataaaaggctgctctaga 33414416  T
Q  180 agag 183  Q
    ||||    
T  33414417 agag 33414420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 33292802 - 33292877
Alignment:
Q  112 cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaag 187  Q
    ||||||||||| ||||| |||||| |||||  |||||||||||||||||||||||||||| ||||| |||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaag 33292877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
Q  247 caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga 346  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||||  | ||| |  | | ||||||||||     
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg 33407009  T
Q  347 ttcttccttcttctgctagtctcccggatttcttatcagc 386  Q
    || |||| ||  |||||||||| | |||||||||||||||    
T  33407010 tttttccatcggctgctagtcttctggatttcttatcagc 33407049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 33351414 - 33351497
Alignment:
Q  80 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaat 163  Q
    |||||||| | |||||||| |||| | ||| |||||||||||| |||||||||||| |||||||  ||||||||| ||||||||    
T  33351414 aaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat 33351497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 386
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
Q  260 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 359  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  33280357 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 33280455  T
Q  360 tgctagtctcccggatttcttatcagc 386  Q
    |  || ||| ||||||||||| |||||    
T  33280456 ttttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 33269355 - 33269392
Alignment:
Q  146 aacactgtcatccttaatgaaaggcttctctagaagag 183  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagag 33269392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 2126 - 2594
Alignment:
Q  18 agaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2126 agaacagacattcaacaattagaaatattttgtaagaattctgagataggtcgatggtctggaaaacgccacactttaatggtctcgcaaatgccagcta 2225  T
Q  118 tacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2226 tacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagagaaagatttccttcgtaacaaactgaacctgtgga 2325  T
Q  218 ccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326 ccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacca 2425  T
Q  318 atgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2426 atgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgct 2525  T
Q  418 tgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2526 tgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 261 - 486
Target Start/End: Complemental strand, 15278 - 15059
Alignment:
Q  261 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 360  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  15278 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 15184  T
Q  361 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 460  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  15183 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 15085  T
Q  461 tacagtccatcatccctgcacaggtt 486  Q
    ||||||||||| |||| |||| ||||    
T  15084 tacagtccatcgtcccagcaccggtt 15059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 386
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
Q  260 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 359  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  13896 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 13798  T
Q  360 tgctagtctcccggatttcttatcagc 386  Q
    |  || ||| ||||||||||| |||||    
T  13797 ttttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 228 - 486
Target Start/End: Complemental strand, 17447961 - 17447703
Alignment:
Q  228 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 327  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  17447961 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 17447862  T
Q  328 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga-ccctttttgatgagatatgcttgcggcttt 426  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||| ||||||||  |||| |||||||||| ||||    
T  17447861 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt 17447763  T
Q  427 tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 486  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||||    
T  17447762 tcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt 17447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 17445857 - 17445786
Alignment:
Q  112 cagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctagaagag 183  Q
    ||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||    
T  17445857 cagctatactttgcctcaccaaatatttcactgaaacgctgtcatccttaatgaaaggctgctctagaagag 17445786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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