View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_7 (Length: 482)
Name: NF2683_low_7
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Original strand, 43715409 - 43715879
Alignment:
| Q |
11 |
cacagaccttttgcaatatgataagattcaatgcggcgttttagtatagaccatctgaaatctgcaaaaaatttatcccctcatgaagttgcatttggtg |
110 |
Q |
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| T |
43715409 |
cacagaccttttgcaatatgataagattcaatgcggcgttttagtatagaccatctgaaatctgcaaaaaatttatcccctcatgaagttgcatttggtg |
43715508 |
T |
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| Q |
111 |
tctttccctattatctttaagtaatttggctaatttacaaaaacagataaactgaactcattgaaaaatgaatgaaaaaatttcatcgcacaagtgattt |
210 |
Q |
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| T |
43715509 |
tctttccctattatctttaagtaatttggctaatttacaaaat-agataaactgaactcattgaaaaatgaatgaaaaaatttcatcgcgcaagtgattt |
43715607 |
T |
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| Q |
211 |
gttatagttgatttctaactataaatttgaacacagtaaaagaatcacttatggatatgcaaaccatatgaacaaggcgaacaaagcaattgcataaaaa |
310 |
Q |
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| T |
43715608 |
gttacagttgatttctaactataaatttgaacacagtaaaagaatcacttatggatatgcaaaccatatgaacaaggcgaacaaagcaattgcataaaaa |
43715707 |
T |
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| Q |
311 |
tcagtcatacaaaattagatgcatccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaaatagaaacatggattgaaaggaaa |
410 |
Q |
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| T |
43715708 |
tctgtcatacaaaattagatgcatccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaaatagaaacatggattgaaaggaaa |
43715807 |
T |
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| Q |
411 |
acatggtataatggaccatnnnnnnntccaacttttaaatatgtcaaataataagaaataaagcaacagaac |
482 |
Q |
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| T |
43715808 |
acatggtataatggaccataaaaaaatccaacttttaaatatgtcaaataataagaaataaagcaacagaac |
43715879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 52892170 - 52891930
Alignment:
| Q |
18 |
cttttgcaatatgataagattcaatgcggcgttttagtatagaccatctgaaatctgcaa-aaaatttatcccctcatgaagttgcatttggtgtctttc |
116 |
Q |
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| T |
52892170 |
cttttgcaatatgctaagagtcaatgcggcgttgtagtacagaccatctgaaatctgcaaaaaaatatatcctcttatgaagttgcatttggtgtctttc |
52892071 |
T |
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| Q |
117 |
cctattatctttaagtaatttggctaatttacaaaaacagataaactgaactcattgaaaaatgaatgaaaaaatttcatcgcacaagtgatttgttata |
216 |
Q |
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| T |
52892070 |
cctattatctttaagaaattttgccaacttac-aagatagataaactgcactcattgaaaaatgaatgaataaatttcatccgacaagtgattcgtagca |
52891972 |
T |
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| Q |
217 |
gttgatttctaa--ctataaatttgaacacagtaaaagaatc |
256 |
Q |
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| T |
52891971 |
gttgatttctaactctataaatttgaactcagtaaaagaatc |
52891930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 52891929 - 52891786
Alignment:
| Q |
287 |
gcgaacaaagcaattgcataaaaatcagtcatacaaaattagatgcatccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaa |
386 |
Q |
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| T |
52891929 |
gcgaacaaagcaattgcataaaaaactgccatacaaaattagatgcatccaacttcttataacccacacacttgttgtagctcgtaagccaatgttcaaa |
52891830 |
T |
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| Q |
387 |
atagaaac-atggattgaaaggaaaacatggtataatggaccat |
429 |
Q |
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| T |
52891829 |
atagaaacaatgggttgaaaagaaaacatggtataatggaccat |
52891786 |
T |
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