View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2683_low_8 (Length: 478)
Name: NF2683_low_8
Description: NF2683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2683_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 21 - 463
Target Start/End: Original strand, 4646399 - 4646841
Alignment:
| Q |
21 |
gcaatcttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataatgtat |
120 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4646399 |
gcaatcttgataccaagagacaacaatttattgtacaattttttagattcaggaagtgctggtgctgttccaagatcaacccattgattaaataatgtat |
4646498 |
T |
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| Q |
121 |
cattgtatggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaacta |
220 |
Q |
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| T |
4646499 |
cattgtatggttccaccctatcaattcattatatatatgtgttaaatagcatatatatacaaaaagtaaaacaaaatgcaaagttagagtatgaaaacta |
4646598 |
T |
|
| Q |
221 |
aagataaagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttacc |
320 |
Q |
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| T |
4646599 |
aagataaagatgatcgatcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttacc |
4646698 |
T |
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| Q |
321 |
agttgttatattaagagtctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatat |
420 |
Q |
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| T |
4646699 |
agttgttatattaagagtctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatat |
4646798 |
T |
|
| Q |
421 |
ttctcacattcttttggtatagttttccaatttatgatgttgt |
463 |
Q |
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| T |
4646799 |
ttctcacattcttttggtatagttttccaatttatgatgttgt |
4646841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 237 - 463
Target Start/End: Complemental strand, 23699227 - 23699001
Alignment:
| Q |
237 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaaga |
336 |
Q |
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| T |
23699227 |
atcatacccaaatccgtgtttagcataatatggaagatttgatagggaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaaga |
23699128 |
T |
|
| Q |
337 |
gtctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatttctcacattcttttg |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23699127 |
gtctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatttctcacattcttgcg |
23699028 |
T |
|
| Q |
437 |
gtatagttttccaatttatgatgttgt |
463 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
23699027 |
gtatagttttccaatttatgatattgt |
23699001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 239 - 461
Target Start/End: Original strand, 4651174 - 4651396
Alignment:
| Q |
239 |
catacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagt |
338 |
Q |
| |
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||||||||||||| ||| | |||||||| ||||| || || |||| |||||||||||| ||||| ||||| | |||| ||||| | ||| ||| ||||| |
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| T |
4651174 |
catacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagt |
4651273 |
T |
|
| Q |
339 |
ctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatttctcacattcttttggt |
438 |
Q |
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| ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||| |||| ||||| |||||||||| || |
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| T |
4651274 |
tctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacatattcttcacattcttgagga |
4651373 |
T |
|
| Q |
439 |
atagttttccaatttatgatgtt |
461 |
Q |
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| ||||||||| || |||||||| |
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| T |
4651374 |
acagttttccagttaatgatgtt |
4651396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 23678904 - 23678814
Alignment:
| Q |
343 |
gcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatttctcacattctt |
433 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| | ||| ||||| |||| ||||| |||||||||| |
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| T |
23678904 |
gcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatgtagtttccaacatattcttcacattctt |
23678814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 41872639 - 41872765
Alignment:
| Q |
17 |
gaatgcaatcttgatgccaagagacaacaatttattgtacaatttttcagattcaggaagtgctggggctgttccaagatcaacccattgattaaataat |
116 |
Q |
| |
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|||| |||||||||| ||||||||||| | ||||||||| | ||||| |||||| || |||||||| ||||| ||||| || |||||| |||||| | |
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| T |
41872639 |
gaatacaatcttgataccaagagacaatagtttattgtaaagtttttgagattctggcagtgctggtgctgtgccaaggtctgcccattcattaaacgac |
41872738 |
T |
|
| Q |
117 |
gtatcattgtatggttccaccctatca |
143 |
Q |
| |
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| T |
41872739 |
gtcgcattgaatggttccaccctatca |
41872765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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