View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2684_high_2 (Length: 266)
Name: NF2684_high_2
Description: NF2684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2684_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 1081023 - 1080762
Alignment:
| Q |
5 |
gagcagcacagactctaaataacctgctacagatggttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcgagccttcaat |
104 |
Q |
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| T |
1081023 |
gagctgcacagactctaaataacctgctacagatggttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcgagccttcaat |
1080924 |
T |
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| Q |
105 |
gcaccgtaatcactgaagcaatcaaggagttcttgattccccattcctgtccactacaattcaactcagtgaggttaaactacagaggaacttcacatta |
204 |
Q |
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| T |
1080923 |
gcaccgtaatcactgaagcaatcaaggagttcttgattccccattcctgtccactacaattcaactcagtgaggttaaactacagaggaacttcacatta |
1080824 |
T |
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| Q |
205 |
gataaattaaaagaaaatcacaaaaggactaagactcttataggagatacgaaaatttgttt |
266 |
Q |
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| T |
1080823 |
gataaattaaaagaaaatcacaaaaggactaagactcttataggagatacgaaaatttgttt |
1080762 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 44839254 - 44839307
Alignment:
| Q |
41 |
ttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcg |
94 |
Q |
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| T |
44839254 |
ttcaaacatcaaaacactcatccctcgatgaccattagggccatatgagtgtcg |
44839307 |
T |
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