View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2684_low_1 (Length: 391)
Name: NF2684_low_1
Description: NF2684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2684_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 41094390 - 41094780
Alignment:
| Q |
1 |
tcttctgaaggtcctgttcttcctgatcccactcaaatgcaagaggaaggctttgctagacgcgaatggcgaaggttacatttcnnnnnnnnctcttttg |
100 |
Q |
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| T |
41094390 |
tcttctgaaggtcctgttcttcctgatcccactcaaatgcaagaggaaggctttgctagacgcgaatggcgaaggttacatttcttttttttctcttttg |
41094489 |
T |
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| Q |
101 |
ctgaaattaatctatatatatgtattgttacatgtaatgtgacttttgtgttatgggaaatggaagcttgtattattttgtattacaatttttatcatgc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094490 |
ctgaaattaatctatatgtatgtattgttacatgtaatgtgacttttgtgttatgggaaatggaagcttgtattattttgtattacaatttttatcatgc |
41094589 |
T |
|
| Q |
201 |
actcaatgagtaaatcagtttatagtattgtttttggaaatattacacaaacatctaaataatacaatctgagtagaagtttcgacaaaactatttcaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094590 |
actcaatgagtaaatcagtttatagtattgttttttgaaatattacacaaacatctaaataatacaatctgagtagaagtttcgacaaaactatttcaca |
41094689 |
T |
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| Q |
301 |
caatcagaaaattcannnnnnnagtcccttataattttcgcgtggtctaatttagtacttgacaaaaacaatactcaaactagtccctgac |
391 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094690 |
caatctgaaaattcatttttttagtcccttataattttcgcgtggtctaatttagtacttgacaaaaacaatactcaaactagtccctgac |
41094780 |
T |
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