View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2684_low_5 (Length: 242)
Name: NF2684_low_5
Description: NF2684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2684_low_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 3439101 - 3438876
Alignment:
| Q |
17 |
ttctccaattgctctcttctgtaagaacaaaaatcacatgagtttacaagtaaaccttagagctagaaaacaaaataatgtgactcacgtataaacatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3439101 |
ttctccaattgctctcttctgtaagaacaaaaatcacatgagtttacaagtaaaccttagagctagaaaacaaaataatgtgactcacgtataaacatgt |
3439002 |
T |
|
| Q |
117 |
ggtcgcttatcagaggcgtggtcgagtaaggttttacgagcccactcccatgctccttgtattgaatcataatgaggctgatagtagcaaaagttatcag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3439001 |
tgtcgcttatcagaggcgtggtcgagtaaggttttacgagcccactcccatgctccttgtattgaatcataatgaggctgatagtagcaaaagttatcag |
3438902 |
T |
|
| Q |
217 |
caagttctctccgcacaatcaactcc |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3438901 |
caagttctctccgcacaatcaactcc |
3438876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University