View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2684_low_7 (Length: 207)
Name: NF2684_low_7
Description: NF2684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2684_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 18157872 - 18157957
Alignment:
| Q |
96 |
gtggtaatggtgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagatcaagattcttcatccaaccctagagaa |
187 |
Q |
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| T |
18157872 |
gtggtaacggtgaagtttgggttagtttttctattaataggagtaggagaa------atcaagatcaagattcttcatccaaccctagagaa |
18157957 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 18150609 - 18150673
Alignment:
| Q |
96 |
gtggtaatggtgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagat |
160 |
Q |
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| T |
18150609 |
gtggtaacgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagat |
18150673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 18161583 - 18161648
Alignment:
| Q |
96 |
gtggtaatggtgaagtttgggttagtttttctattaataggagt---aggagaaatcaagatcaag |
158 |
Q |
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| T |
18161583 |
gtggtaacggtgaagtttgggttagtttttctattaacaggagtaggaggagaaatcaagatcaag |
18161648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18157771 - 18157802
Alignment:
| Q |
1 |
tcctgtttgtaggtatcagatgcctgttgatc |
32 |
Q |
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| T |
18157771 |
tcctgtttgtaggtatcagatgcctgttgatc |
18157802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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