View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685R-Insertion-1 (Length: 980)
Name: NF2685R-Insertion-1
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685R-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Original strand, 42239949 - 42240459
Alignment:
| Q |
9 |
tttttgacgtgtcaatatattgaatacaaaaatcgtaagataaaacgacttttattttaaactttttatcaaatacctaaagactacttattagcatttt |
108 |
Q |
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| T |
42239949 |
tttttgacgtgtcaatgtattgaatacaaaaatcgtaagataaaac---ttttattttaaactttttatcaaatacctaaagactatttgttagcatttc |
42240045 |
T |
|
| Q |
109 |
taattaaaaatta-taaattgcataaaatcaaattttatcggatatgcttaggtaacaattgctggaaccagttcgaattttagattcctttcataaaat |
207 |
Q |
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| T |
42240046 |
taattaaaaaataataaattgcataaaatcgaattttatcggatatgcttaggtaacgattactggaaccagttcgaattttagattcctttcataaaat |
42240145 |
T |
|
| Q |
208 |
ctaactgaaccaaacccaatagcatacacaaatattgatactttgtttatttgtataaaatactgaattgatttatttatttttaaatagatgaaataac |
307 |
Q |
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| T |
42240146 |
ctaactgaaccaaacccaatagcatacacaaatattgatactttgtttatttgtataaaatactgaattgatttatttatttttaaatattcgaaataac |
42240245 |
T |
|
| Q |
308 |
aataaacattaaaaactcacacatataaatgggggagtcgtggttcaaaccccggtcacaacacttgtcttaacagtttcaacatttttattagttgagt |
407 |
Q |
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| T |
42240246 |
aataaacattaaaaaat-tcacatataagtgggggagtcgaggttcaaaccccggtcacaatatttgtcttaacagtttcaacatttttattagttgagt |
42240344 |
T |
|
| Q |
408 |
taagactcgtagacattacattgatatgttatttgttgannnnnnnnnaataatacttattagttaaatttaatccaacatttttactaattc--atgtt |
505 |
Q |
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| T |
42240345 |
taagactcgtagacattacattgatatgttatttgttga-ttttttttaataatacttattagttaaatttaatccaacatttttgctaattcatatgtt |
42240443 |
T |
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| Q |
506 |
tcaaatataaataatt |
521 |
Q |
| |
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| T |
42240444 |
tcaaatataaataatt |
42240459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 614 - 934
Target Start/End: Original strand, 42240552 - 42240867
Alignment:
| Q |
614 |
cacaaaattgttttgaatatccgaaaaacggtctaaactaaaccgcatacaactggatcagatatgannnnnnnnnnnnnnaaatcatccaaa-ttaact |
712 |
Q |
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| T |
42240552 |
cacaaaattgttttgaatatccggaaaacggtctaaactaaaccgtatacaactggatcagatataattttttttt-----aaatcatccaaacttaact |
42240646 |
T |
|
| Q |
713 |
gaaccacaagcatttaaattttttgatcagatgactttttgtttcacggccaataaaaaatgcacacaaacattactatgaacgagacaccacttatcgt |
812 |
Q |
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| T |
42240647 |
gaaccacaagcatttaaatttt-tgatcagatgactttttgtttcacggccgataaaaaaggcacacaaacattactatgaacgaaacaccacttatcgt |
42240745 |
T |
|
| Q |
813 |
ttgatattttcctaatcacaaacctcaccactatctctagttacattaactaatg-ttgtgttgcttactccctccgtcc-aaatt-aatgagtcattgc |
909 |
Q |
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| T |
42240746 |
ttgatattttcctaatcacaaacctcacc---atttctagttccattaactaatgtttgtgttgcttactccctccgtcctaaattaaatgagtcatttg |
42240842 |
T |
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| Q |
910 |
ttcatttcacgtataattaattgag |
934 |
Q |
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| T |
42240843 |
ctcatttcacgtataattaattgag |
42240867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 30022132 - 30022098
Alignment:
| Q |
384 |
tttcaacatttttattagttgagttaagactcgta |
418 |
Q |
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| T |
30022132 |
tttcaacatatttattagttgagttaagactcgta |
30022098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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