View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685R-Insertion-11 (Length: 370)

Name: NF2685R-Insertion-11
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685R-Insertion-11
NF2685R-Insertion-11
[»] chr4 (16 HSPs)
chr4 (8-332)||(3816415-3816744)
chr4 (34-332)||(3808839-3809137)
chr4 (85-312)||(3956533-3956760)
chr4 (149-325)||(4024013-4024189)
chr4 (67-317)||(4001127-4001377)
chr4 (151-317)||(3934086-3934252)
chr4 (149-317)||(3985821-3985989)
chr4 (149-317)||(4217452-4217620)
chr4 (151-317)||(3920865-3921031)
chr4 (67-256)||(3800482-3800671)
chr4 (209-326)||(4008825-4008942)
chr4 (243-307)||(4017510-4017574)
chr4 (67-109)||(3920775-3920817)
chr4 (67-109)||(3933996-3934038)
chr4 (243-309)||(3964730-3964796)
chr4 (67-131)||(4009029-4009093)
[»] chr5 (1 HSPs)
chr5 (31-312)||(13396800-13397087)
[»] chr6 (3 HSPs)
chr6 (332-370)||(27682682-27682720)
chr6 (332-370)||(27690003-27690041)
chr6 (332-370)||(30230244-30230282)
[»] chr2 (2 HSPs)
chr2 (332-370)||(31712534-31712572)
chr2 (332-370)||(39156539-39156577)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 3816744 - 3816415
Alignment:
Q  8 actttcatgactgcaggttaccaatgctattagaagcataagtttgccaacaatgagggagctaaagctaagccgtcatgtattt-gataagatgaccaa 106  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  3816744 actttcatgattgcagggtaccaatgctattagaagcataagtttgccaacaatgagggagctgaagttaagccgtcatgtattttgataagatgaccaa 3816645  T
Q  107 cctgcggttttt-gtattttcttggtatggaaggtttt-gattg--tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggac 202  Q
    |||||||||||| |||||||  |||||| ||||||||| ||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816644 cctgcggttttttgtattttggtggtatagaaggtttttgatttgtttttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggac 3816545  T
Q  203 atactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtg 302  Q
    |||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  3816544 atactgccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtg 3816445  T
Q  303 caggtaattggatatttatcttccaaatta 332  Q
    ||||||||||||||||||||||||||||||    
T  3816444 caggtaattggatatttatcttccaaatta 3816415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 3809137 - 3808839
Alignment:
Q  34 ctattagaagcataagtttgccaacaatgagggagctaaagctaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtat 133  Q
    |||| |||||||||||| ||| |||||||||| ||||  || |||||| || ||||||||||||||||||||| || || ||||||||||||  || |||    
T  3809137 ctataagaagcataagtctgcgaacaatgaggaagctcgagttaagccctcgtgtatttgataagatgaccaaacttcgatttttgtattttggtgatat 3809038  T
Q  134 ggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaat 233  Q
     ||  ||||  |||||||||||||| || ||||||||||||||  |  | ||| ||||||||||||||  || || |||||||||||||||||||||||     
T  3809037 agatagtttcaattgtcttcctcaaaggtttcaatcttttccaactaatctaagatatcttcattggatgtattgtcctctaaaatcattcccagagaac 3808938  T
Q  234 ttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta 332  Q
    |||||| |||||||||||||||||||| ||||||   |||||  | | |||||||||||| ||||||||||||||||||||||  | ||||||||||||    
T  3808937 ttttctgcagagaatcttgttatattgaacttgtatgatagtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaatta 3808839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 312
Target Start/End: Original strand, 3956533 - 3956760
Alignment:
Q  85 atgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtat 184  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||  || || ||||| ||| || ||||| ||||| ||||||||||||||  || | |    
T  3956533 atgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttggatcgtattcctgaagggattcaatcttttccaactgatct 3956632  T
Q  185 aaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaa 284  Q
    ||||||||||||||||| ||  | ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||| |||||  ||| ||| | |||    
T  3956633 aaaatatcttcattggatatgttaccctctaaaatcactctcagagaagttttctgcagagaatcttgttatattggacctgtcaggtagcctactggaa 3956732  T
Q  285 aagctttggtgtggagtgcaggtaattg 312  Q
    || |||||||||||||||||| ||||||    
T  3956733 aaactttggtgtggagtgcagataattg 3956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 4024189 - 4024013
Alignment:
Q  149 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 248  Q
    ||||||||||||||||||||||||||||  || | ||| |||||||  |||||   | | |||||||||||||||||||||||| |||||| || |||||    
T  4024189 tcttcctcaagggcttcaatcttttccaactgatctaagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaat 4024090  T
Q  249 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttc 325  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| || |||||| |||||    
T  4024089 cttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttc 4024013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 67 - 317
Target Start/End: Complemental strand, 4001377 - 4001127
Alignment:
Q  67 agctaaagctaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttca 166  Q
    |||| ||| |||||| ||||||||||| |||||||||||||||||| | |||| ||||  ||||||   | | ||| ||   ||||||||||||||||||    
T  4001377 agctgaagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttcattggtaaatacgatttggaacttcttcctcaagggcttca 4001278  T
Q  167 atcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttg 266  Q
    |||||| |||  || | ||| |||| ||  ||||| | | | ||||||||||||||||||| |||| ||||||  | ||||||||||||||||||||||     
T  4001277 atctttcccaactgatctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaatcttgttatattggacttt 4001178  T
Q  267 tcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 317  Q
    ||| |||||| | | ||||| ||||||||||||||||||||||||| ||||    
T  4001177 tcacatagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatat 4001127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 3934086 - 3934252
Alignment:
Q  151 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 250  Q
    |||||||||||||| |||||||||||  |||| | | |||||||||||||  ||  | |||||||||||||||||||||||| |||||| ||||||||||    
T  3934086 ttcctcaagggcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatct 3934185  T
Q  251 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 317  Q
    |||||||||||||||||    ||||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3934186 tgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3934252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 317
Target Start/End: Complemental strand, 3985989 - 3985821
Alignment:
Q  149 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 248  Q
    ||||||||||||||||||| ||||||||  || | ||| |||||||||||||  | | | ||||||| | ||||| ||| |||| |||||| |||||||     
T  3985989 tcttcctcaagggcttcaaccttttccaactgatctaagatatcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaa 3985890  T
Q  249 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 317  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||||||||| |||||||||| ||||    
T  3985889 cttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatat 3985821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 317
Target Start/End: Complemental strand, 4217620 - 4217452
Alignment:
Q  149 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 248  Q
    |||||||| |||||||||||||||||||  || | ||| |||||||| ||||  ||  | |||||||||||||||||||||||| |||||| ||||||||    
T  4217620 tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaacttttctgcagagaat 4217521  T
Q  249 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 317  Q
    |||||||||||| |||||   ||||||  | | |||||||||||||||||||| |||||||||| ||||    
T  4217520 cttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatat 4217452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 317
Target Start/End: Original strand, 3920865 - 3921031
Alignment:
Q  151 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 250  Q
    |||||||||||||| |||||||||||  |||| ||| |||||||||||||| | | | |||||||||||||||| ||||||| |||| | | ||||||||    
T  3920865 ttcctcaagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatct 3920964  T
Q  251 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 317  Q
    |||||||||||||||||    | ||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3920965 tgttatattggacttgtatcttggtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3921031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 256
Target Start/End: Complemental strand, 3800671 - 3800482
Alignment:
Q  67 agctaaagctaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttca 166  Q
    |||| ||| |||||| ||||||||||| ||||||||||||| |||| | |||| |||||| |||||   | | ||| ||   ||||||||||||||||||    
T  3800671 agctgaagttaagccctcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttggaacttcttcctcaagggcttca 3800572  T
Q  167 atcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttat 256  Q
    ||||||||||  || | ||| ||||||||||||||   | | |||||||||||||||||||||||| |||||| || |||||||||||||    
T  3800571 atcttttccaaatgatctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttat 3800482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 4008942 - 4008825
Alignment:
Q  209 ccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggta 308  Q
    ||||||||||||||| ||| |||| |||||| | ||||||||||||||||| |||||||||| ||| | | | ||||||||||||| ||||||| |||||    
T  4008942 ccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggta 4008843  T
Q  309 attggatatttatcttcc 326  Q
    ||||  ||| ||||||||    
T  4008842 attgactatgtatcttcc 4008825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 4017574 - 4017510
Alignment:
Q  243 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggt 307  Q
    ||||| || ||||||||||||||||||||||||| | |||||||||| |||  ||||||||||||    
T  4017574 gagaaactcgttatattggacttgtcatatagtcgagttgaaaagctctggcatggagtgcaggt 4017510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 3920775 - 3920817
Alignment:
Q  67 agctaaagctaagccgtcatgtatttgataagatgaccaacct 109  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  3920775 agctaaagttaagccctcatgtatttgataagatgaccaacct 3920817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 3933996 - 3934038
Alignment:
Q  67 agctaaagctaagccgtcatgtatttgataagatgaccaacct 109  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  3933996 agctaaagttaagccctcatgtatttgataagatgaccaacct 3934038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 3964730 - 3964796
Alignment:
Q  243 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaa 309  Q
    ||||| || ||||||||||||||||||||||||| | ||||||| || |||  ||||||||||||||    
T  3964730 gagaaactcgttatattggacttgtcatatagtcgagttgaaaaactctggcatggagtgcaggtaa 3964796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 4009093 - 4009029
Alignment:
Q  67 agctaaagctaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggt 131  Q
    |||| ||| |||||| ||||||||||| |||||||||||||||||  |||||| |||||| ||||    
T  4009093 agctgaagttaagccctcatgtatttgctaagatgaccaacctgctatttttggattttcatggt 4009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 312
Target Start/End: Complemental strand, 13397087 - 13396800
Alignment:
Q  31 atgctattagaagcataagt------ttgccaacaatgagggagctaaagctaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattt 124  Q
    ||||||||||||||||||||      ||| || |||| ||| |||| ||| ||||||  | |||||||||||||||||||||||||   |||||||||||    
T  13397087 atgctattagaagcataagtgtagacttgtcagcaattaggaagctgaagttaagcccgcctgtatttgataagatgaccaacctgaaatttttgtattt 13396988  T
Q  125 tcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattc 224  Q
    || || ||| || ||||| ||| ||||||||||||||||||||| |||||||  || | ||| ||||||| ||||||   | | ||||||||||||||||    
T  13396987 tcatgatatagacggtttggatcgtcttcctcaagggcttcaattttttccaactgatctaagatatctttattggatgcattaccctctaaaatcattc 13396888  T
Q  225 ccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattg 312  Q
    |||||||| ||||||   || |||||||||||| ||| |||| ||||||| ||  | |||||||||||||||||||| ||||||||||    
T  13396887 ccagagaagttttctgttgataatcttgttatactgggcttgccatatagccttgtagaaaagctttggtgtggagtacaggtaattg 13396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 27682682 - 27682720
Alignment:
Q  332 ataacacttccctcattctttctcttcctcccgtagctc 370  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27682682 ataacacttccctcattctttcttttcctcccgtagctc 27682720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 27690003 - 27690041
Alignment:
Q  332 ataacacttccctcattctttctcttcctcccgtagctc 370  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27690003 ataacacttccctcattctttcttttcctcccgtagctc 27690041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 30230282 - 30230244
Alignment:
Q  332 ataacacttccctcattctttctcttcctcccgtagctc 370  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30230282 ataacacttccctcattctttcttttcctcccgtagctc 30230244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 31712534 - 31712572
Alignment:
Q  332 ataacacttccctcattctttctcttcctcccgtagctc 370  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  31712534 ataacacttccctcattctttcttttcctcccgtagctc 31712572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 39156577 - 39156539
Alignment:
Q  332 ataacacttccctcattctttctcttcctcccgtagctc 370  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39156577 ataacacttccctcattctttcttttcctcccgtagctc 39156539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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