View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685R-Insertion-3 (Length: 915)
Name: NF2685R-Insertion-3
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685R-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 325 - 822
Target Start/End: Original strand, 43614617 - 43615112
Alignment:
| Q |
325 |
caagaaagaaaaattagatatgacaacttgtttttgaaactcttaattataaaactttgacatattagcaacaaaaggtaagttttatttattttacaaa |
424 |
Q |
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| T |
43614617 |
caagaaagaaaaattagatatgacaaattgtttttgaaactcttatttataaa-ctttgacatattagcaacaaacggtaagttttatttattttacaaa |
43614715 |
T |
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| Q |
425 |
gcatgttcgtgnnnnnnnnnnnctcctatttataatcaagtgatcgaacttaggtgtttaatgaattttattcaataacgaatcgttgaagaattgatgg |
524 |
Q |
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| T |
43614716 |
gcatgttcgtgaaaaaaaaa--ctcttatttacaatcaagtgatcgaacttaggtgtttaatgaattttattcaataacgaatcgttgaagaattgatgg |
43614813 |
T |
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| Q |
525 |
atttattgatggaataattcttggctaactttatttacctcctgttgaattctgaattattttgaccctattnnnnnnnnnnnnn-ctcttatttatgtg |
623 |
Q |
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| T |
43614814 |
atttattgatggaataattcttggctaactttatttacctcccgttgaattctgaattattttgaccctattaaaaaaaaaaaaaactcttatttatgtg |
43614913 |
T |
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| Q |
624 |
cttttgtgtgttgctggacgaaaaattgagaaaaacgggcaagacatttgaaacaatagatccaagaacaggggaagttatagcaaggatcagcgaagga |
723 |
Q |
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| T |
43614914 |
cttttgtgtgttgctggacgaaaaattgagaaaaacaggcaagacatttgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaagga |
43615013 |
T |
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| Q |
724 |
accaaagaagacattgatgttgctgtaaaggcagctcgttatgcatttgactttggtccttggccccgcctgcctggtgctgtatgttatttttccttc |
822 |
Q |
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| T |
43615014 |
accaaagaagacattgatgttgctgtaaaggcagctcgttatgcatttgactttggtccttggccccgcctgcctggtgctgtatgttatttttccttc |
43615112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 43614422 - 43614552
Alignment:
| Q |
130 |
acaaattgacatgattctatctataaataacaaagttttgcgtttttatttaacttgaatgataaatagttgcctcaacaaatatggtaataataacact |
229 |
Q |
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| T |
43614422 |
acaaattgacatgattctatctataaataacaaagttttgcgtttttatttaacttgaatgataaatagttgcctcaacaaatatggtaataataacact |
43614521 |
T |
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| Q |
230 |
gacacatcagtcatgctataaccatcatgtt |
260 |
Q |
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| T |
43614522 |
gacacatcagtcatgctataaccatcatgtt |
43614552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 43614317 - 43614387
Alignment:
| Q |
9 |
attttgtggattcggttacaggtcaatactataataatatatttccatttattttgttcacactagtgcta |
79 |
Q |
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| T |
43614317 |
attttgtggattcggttacaggtcaatactataataatatatttccatttattttgttcacactagtgcta |
43614387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 812
Target Start/End: Original strand, 43626085 - 43626230
Alignment:
| Q |
667 |
acatttgaaacaatagatccaagaacaggggaagttatagcaaggatcagcgaaggaaccaaagaagacattgatgttgctgtaaaggcagctcgttatg |
766 |
Q |
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| T |
43626085 |
acatttgaaacaatagacccaagaacaggagatgtgattgcaagaataagtgaaggagcaaaagaagacattgaaattgcagttaaagcagcacgtgaag |
43626184 |
T |
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| Q |
767 |
catttgactttggtccttggccccgcctgcctggtgctgtatgtta |
812 |
Q |
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| T |
43626185 |
catttgattcaggtccatggccccggatgtctggtgttgtatgtta |
43626230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 846 - 880
Target Start/End: Original strand, 43615156 - 43615190
Alignment:
| Q |
846 |
ctactatgttgatattaaatgaattattttagaca |
880 |
Q |
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| T |
43615156 |
ctactatgttgatattaaatgaattattttagaca |
43615190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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