View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685R-Insertion-4 (Length: 905)
Name: NF2685R-Insertion-4
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 277 - 851
Target Start/End: Original strand, 19197684 - 19198256
Alignment:
| Q |
277 |
atcatttcagacttattgctcatactagactgctaattgttttacagatagcatctactcatgtttttgaactttgaaaaagttatgaataagacacaaa |
376 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
19197684 |
atcatttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgttttttaactttgaaaaagttatgaataaggcacaaa |
19197783 |
T |
|
| Q |
377 |
tttaacaagacctagaacattatytaattttaagtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaa |
476 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19197784 |
tttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataaa |
19197883 |
T |
|
| Q |
477 |
gagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttgtcatacc |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19197884 |
gagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctcatac- |
19197982 |
T |
|
| Q |
577 |
agctgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctttgtt |
676 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19197983 |
--ctgacaatatttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctttgtt |
19198080 |
T |
|
| Q |
677 |
agaaattcaatgtaatcctgcttccaagtacctttgtttgatcttgtcgggctcagttctctcctgtatatttgcccattgtttgatcttgtcgatcaaa |
776 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| | |
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| T |
19198081 |
agaaattcaatgtaatcctgcttccaagtacctttggttgatcttgtcgggctcagttctctcctgtttatctgcccattatttgatcttgtcgatcaca |
19198180 |
T |
|
| Q |
777 |
gtttcatccaatacatatgcacttgtctccccattg-ttgatcctgttgtagtctctctttgagggtcaggtttcc |
851 |
Q |
| |
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|||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19198181 |
gttttctcccatacatctgcacttgtctccccattgtttgatcctgttgtagtctctctttgagggtcaggtttcc |
19198256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 277 - 740
Target Start/End: Original strand, 19201664 - 19202128
Alignment:
| Q |
277 |
atcatttcagacttattgctcatactagactgctaattgttttacagatagca---tctactc--atgtttttgaactttgaaaaagttatgaataagac |
371 |
Q |
| |
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|||||| ||||||||||| ||||||||||| |||||||||||| || |||||| ||||||| ||||||| ||||| ||||||||||||||||||||| |
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| T |
19201664 |
atcattccagacttattgttcatactagacagctaattgttttgcacatagcaccatctactctcatgtttt-gaactgtgaaaaagttatgaataagac |
19201762 |
T |
|
| Q |
372 |
acaaatttaacaagacctagaacattatytaattttaagtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaaccta |
471 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||| ||||||| |
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| T |
19201763 |
acaaatttaacaagacctagaacattatctgattttacctaaggaagcatttcatgacatgcttaaagaaagattaaatgcataagatctattaaaccta |
19201862 |
T |
|
| Q |
472 |
ataaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttgtc |
571 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||| |||| |||| || |
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| T |
19201863 |
ataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacactttcaacttctc |
19201962 |
T |
|
| Q |
572 |
ataccagctgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttct |
671 |
Q |
| |
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|||| |||| |||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
19201963 |
atac---ctgagaatgtttttcattaatatataaactgaacgtaatgcttgattcaagagatgatattatttattctagttctgtttgagactgttttct |
19202059 |
T |
|
| Q |
672 |
ttgttagaaattcaatgtaatcctgcttccaagtacctttgtttgatcttgtcgggctcagttctctcc |
740 |
Q |
| |
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|||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
19202060 |
ttgttacagattcaatgtaatcctacttccaagtacctttgtttgatcttctcgagctcagttctctcc |
19202128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 19197424 - 19197663
Alignment:
| Q |
8 |
acttcatcttattatgaaatttctcccaagatttcttctttccccgttcaagttcactctgcaannnnnnncggctttcctcagccttttctatctctcc |
107 |
Q |
| |
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|||||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
19197424 |
acttcatctttttttgaaatttctccgaagatttcttacttccccgttcaagttcactctgcaatttttttcggctttcctcagccttggctatcgctcc |
19197523 |
T |
|
| Q |
108 |
gtctgcaactagatttacatacttctccaaagatttcttccttcccctttcaagttctttctgcaatttagaagtttgcaattagtttttaaattaaagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19197524 |
gtctgcaactagatttacatacttctccaaagatttcttccttcccctttcaagttcactctgcaatttagaagtttgcaattagtttttaaattaaagt |
19197623 |
T |
|
| Q |
208 |
tcaacttttcatctcccactacattttttacccggcctct |
247 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||| |
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| T |
19197624 |
tcaacttttcatctcccaccacattttttacccagcctct |
19197663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 794 - 860
Target Start/End: Original strand, 19202140 - 19202207
Alignment:
| Q |
794 |
tgcacttgtctccccattgtt-gatcctgttgtagtctctctttgagggtcaggtttccctgtagtct |
860 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||| |||| ||||| |||||||| ||| ||||| |
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| T |
19202140 |
tgcatttgtctccccattgtttgatcctgttgtagtctgtcttagagggccaggtttctctgaagtct |
19202207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 19201478 - 19201531
Alignment:
| Q |
79 |
cggctttcctcagccttttctatctctccgtctgcaactagatttacatacttc |
132 |
Q |
| |
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||||||||||||||||| || || | ||||||||||||||||||||||||||| |
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| T |
19201478 |
cggctttcctcagccttggctctcgcgccgtctgcaactagatttacatacttc |
19201531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 19201618 - 19201655
Alignment:
| Q |
214 |
tttcatctcccactacattttttacccggcctctctag |
251 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||| |
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| T |
19201618 |
tttcatctcccactacattttatacccggcctttctag |
19201655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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