View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685R-Insertion-7 (Length: 657)

Name: NF2685R-Insertion-7
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685R-Insertion-7
NF2685R-Insertion-7
[»] chr2 (1 HSPs)
chr2 (9-657)||(5703396-5704040)


Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 657
Target Start/End: Original strand, 5703396 - 5704040
Alignment:
Q  9 ataagatgctcctaggtttcactgcccggtcgttatttgcggtatgctcctcttattgagaataaaactaaagaaatgttaattagtgcatttggggtac 108  Q
    ||||||| ||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||  |    
T  5703396 ataagatactcctcggtttcactgccct-tcgttatttgcggtatgctcctcttattaagaataaaattaaagaaatgttaactaatgcatttggggagc 5703494  T
Q  109 tattaggaagtttcaatcatttgagatgttgccatacaggatgagtttgttagacaattagtggttacacccgtcttcttgtatataaactgattccatt 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||    
T  5703495 tattaggaagtttcaatcatttgagatgttgccatataggatgagtttgttagacaattagt---tacactcgtcttcttgtatataaactgattccatt 5703591  T
Q  209 gagaaataaatcagaatgtgcatttttgactattattatacgaccttgatgactctttgggagaaacttgaacattaccatccaattccccaatgctgga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5703592 gagaaataaatcagaatgtgcatttttgactattattatacgacattgatgactctttgggagaaacttgaacattaccatccaattccccaatgctgga 5703691  T
Q  309 gaatttaggttagaagactgtgttgtttgattatatgaaaacac-----agaaatatttaaagtatatgattatacccctattaataaatnnnnnnntat 403  Q
    ||||||||||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||       |||    
T  5703692 gaatttaggttagaagactatgttgtttgattatatgaaaacacttaagagaaatatttaaagtatatgattatacccctattaataaataaaaaattat 5703791  T
Q  404 ccttccggccaggtcgataaatatcttgcatgaattccttcnnnnnnnttgcatgaataacatggttagaaaatcctctnnnnnnncgtggttcaaacta 503  Q
    |||||||||| ||||||||||||| ||||||||||||| ||           |  || |||||||||||||||||||||       ||||||||||||||    
T  5703792 ccttccggcctggtcgataaatattttgcatgaattccctcaaaaaa-----aaaaaaaacatggttagaaaatcctctaaaaaaacgtggttcaaacta 5703886  T
Q  504 aatgtaagtttttaaggaaaataattatttacttaatatatgcttttgtaaataaagattcttatcttaatttaatctaaacaatgatctgtgatccatc 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5703887 aatgtaagtttttaaggaaaataattatttacttaatatatgcttttgtaaataaagattcttatcttaatttaatctaaacaatgatctgtgatccatc 5703986  T
Q  604 tgagattaaaaattaaactaaatcaagaagcactctctcacctacattatcacg 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5703987 tgagattaaaaattaaactaaatcaagaagcactctctcacctacattatcacg 5704040  T

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