View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685R-Insertion-8 (Length: 417)

Name: NF2685R-Insertion-8
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685R-Insertion-8
NF2685R-Insertion-8
[»] chr8 (5 HSPs)
chr8 (8-228)||(4030060-4030280)
chr8 (227-416)||(4029819-4030005)
chr8 (13-97)||(15349463-15349547)
chr8 (14-59)||(12195893-12195938)
chr8 (14-59)||(12440321-12440366)
[»] chr2 (3 HSPs)
chr2 (19-224)||(29351002-29351207)
chr2 (257-330)||(29351261-29351339)
chr2 (310-370)||(29351338-29351399)
[»] chr4 (29 HSPs)
chr4 (33-145)||(48871154-48871266)
chr4 (33-145)||(48876458-48876570)
chr4 (33-145)||(48886840-48886952)
chr4 (25-196)||(37826291-37826468)
chr4 (10-100)||(45384290-45384380)
chr4 (7-164)||(48155759-48155916)
chr4 (14-179)||(7237065-7237235)
chr4 (94-194)||(48864684-48864784)
chr4 (17-100)||(45365620-45365703)
chr4 (19-136)||(7801217-7801333)
chr4 (19-132)||(7823549-7823661)
chr4 (27-136)||(45371435-45371544)
chr4 (138-197)||(49106117-49106176)
chr4 (138-196)||(7909004-7909062)
chr4 (19-132)||(7814057-7814169)
chr4 (19-80)||(7908876-7908937)
chr4 (24-145)||(50673395-50673516)
chr4 (128-211)||(48734725-48734801)
chr4 (28-86)||(48863848-48863906)
chr4 (36-106)||(49040552-49040622)
chr4 (19-112)||(7787074-7787167)
chr4 (37-196)||(48899341-48899496)
chr4 (138-196)||(7773088-7773144)
chr4 (25-104)||(7790660-7790739)
chr4 (26-97)||(48147116-48147187)
chr4 (359-413)||(48856803-48856858)
chr4 (35-106)||(48903548-48903619)
chr4 (24-94)||(7771974-7772044)
chr4 (10-132)||(50669653-50669775)
[»] chr5 (3 HSPs)
chr5 (33-136)||(9120357-9120463)
chr5 (69-196)||(29696869-29697002)
chr5 (11-196)||(29688698-29688889)
[»] chr3 (2 HSPs)
chr3 (20-196)||(11014798-11014974)
chr3 (18-77)||(47451323-47451382)
[»] chr1 (2 HSPs)
chr1 (27-104)||(24340999-24341076)
chr1 (27-104)||(24353364-24353441)
[»] chr7 (1 HSPs)
chr7 (18-196)||(48884415-48884607)
[»] chr6 (1 HSPs)
chr6 (11-94)||(21016393-21016476)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 4030280 - 4030060
Alignment:
Q  8 atttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggtt 107  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4030280 atttggatctcaagtgaccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgagttt 4030181  T
Q  108 ttgaagtattatctttcactattttcttgttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttgaactttgaatgc 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030180 ttgaagtattatctttcactattttcttgataattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttgaactttgaatgc 4030081  T
Q  208 atttgtagtaccaatcagtat 228  Q
    ||||||| | |||||||||||    
T  4030080 atttgtaatgccaatcagtat 4030060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 227 - 416
Target Start/End: Complemental strand, 4030005 - 4029819
Alignment:
Q  227 atatgtttattgaaaatgttaaaagctttatttgtgcgagagttgggagggtaaggagctcatttgtaataatttgtcatatcatgtgcttttgttcttt 326  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  4030005 atatgtttattgaaaatgttaaaagctttatttgtg----agttgggagggtaaggagctcatttgtaataatttgtcataccatgtgattttgttcttt 4029910  T
Q  327 ctataagcttcactggtatatgg-ttgtatcacagaatgaacattgaattcttgtcaatttgatattccaatgaccctcttacattttcat 416  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4029909 ctataaccttcactggtatatggtttgtatcacagaatgaacattgaattcttgtcaatttgatattccaatgaccctcttacattttcat 4029819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 15349463 - 15349547
Alignment:
Q  13 gatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 97  Q
    |||| |||||||  ||||| |||||||||||| |||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  15349463 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 15349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12195893 - 12195938
Alignment:
Q  14 atctcaagtggtcatgtacacagagtctctgatttcactccctggt 59  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||    
T  12195893 atctgaagtggccatgtatacagagtctctgctttcactccctggt 12195938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12440321 - 12440366
Alignment:
Q  14 atctcaagtggtcatgtacacagagtctctgatttcactccctggt 59  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||    
T  12440321 atctgaagtggccatgtatacagagtctctgctttcactccctggt 12440366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 29351002 - 29351207
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtatta 118  Q
    ||||||||||||||| ||||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29351002 aagtggtcatgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttgtgaaatatta 29351101  T
Q  119 tctttcactattttcttgttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttgaactttgaatgcatttgtagtac 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  29351102 tctttcactattttcttgataattatattgtattatgaactcttgggtggttgcatttgtagggtactatgtgtttgaactttgaatgcacttgtaatac 29351201  T
Q  219 caatca 224  Q
     |||||    
T  29351202 aaatca 29351207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 29351261 - 29351339
Alignment:
Q  257 tttgtgcgagagttgggagggtaaggagctcatttgtaataat-----ttgtcatatcatgtgcttttgttctttctat 330  Q
    |||||| ||||||||| ||||||||||||||||||||||||||     ||||||| |||||||||||||||||||||||    
T  29351261 tttgtgtgagagttggtagggtaaggagctcatttgtaataatttgtcttgtcatgtcatgtgcttttgttctttctat 29351339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 29351338 - 29351399
Alignment:
Q  310 atgtgcttttgttctttct-ataagcttcactggtatatggttgtatcacagaatgaacatt 370  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  29351338 atgtgcttttgttctttctgataagcttcactggtatatgtttctatcacagaatgaacatt 29351399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 48871154 - 48871266
Alignment:
Q  33 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcactatttt 132  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||| |||| || ||||| |||||    
T  48871154 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatttt 48871253  T
Q  133 cttgttaattata 145  Q
    |||| || |||||    
T  48871254 cttgatatttata 48871266  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 48876458 - 48876570
Alignment:
Q  33 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcactatttt 132  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||| |||| || ||||| |||||    
T  48876458 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatttt 48876557  T
Q  133 cttgttaattata 145  Q
    |||| || |||||    
T  48876558 cttgatatttata 48876570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 48886840 - 48886952
Alignment:
Q  33 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcactatttt 132  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||| |||| || ||||| |||||    
T  48886840 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccatttt 48886939  T
Q  133 cttgttaattata 145  Q
    |||| || |||||    
T  48886940 cttgatatttata 48886952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 37826468 - 37826291
Alignment:
Q  25 tcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttc 124  Q
    ||||||| || ||||||||| ||||| |||||| | ||   ||||||| ||||||||||||  |||||||||||||||||||||  || |||| || |||    
T  37826468 tcatgtatacggagtctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttc 37826369  T
Q  125 actattttcttg------ttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
    || |||||||||      | ||||||||||||||||||||||||||| |  || |||||||||||| |||||||||||    
T  37826368 accattttcttgatattttcaattatattgtattatgaactcttgggtgtctggatttgtagggtaatatgtgtttga 37826291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 45384380 - 45384290
Alignment:
Q  10 ttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaa 100  Q
    ||||||||||||||| | |||| |||||||||||  |||||||  ||||| |||||||||||||||||||||||||| |||||||||||||    
T  45384380 ttggatctcaagtggccgtgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45384290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 48155916 - 48155759
Alignment:
Q  7 catttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 106  Q
    |||||||||| ||||||  | |||| ||||||||| || |||||||||||||| |||||| |||||| ||||||||   | |||||||||||||||||||    
T  48155916 catttggatcccaagtgaccgtgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaagaatgaggt 48155817  T
Q  107 tttgaagtattatctttcactattttcttgttaattatattgtattatgaactcttgg 164  Q
     || || || |||| ||||| ||||||||| || |||  |||||||| ||||| ||||    
T  48155816 attaaaatactatccttcacaattttcttgatatttaccttgtattacgaactattgg 48155759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 7237235 - 7237065
Alignment:
Q  14 atctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaag 113  Q
    |||| |||| |||||||| |||||||||||| ||||||||| |||| |||||||||| |||||| |||||||| |||||||||| ||||| ||| ||||     
T  7237235 atctgaagttgtcatgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaaa 7237137  T
Q  114 tattatctttcactattttc------ttgttaattatattgtattatgaactcttgggcggttgcatttgta 179  Q
    |||| || |||| | |||||      ||  |||||||||||| ||||| ||||||||  |||||||||||||    
T  7237136 tattctccttcattgttttctttatatttataattatattgttttatgtactcttggttggttgcatttgta 7237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 48864684 - 48864784
Alignment:
Q  94 agaagaatgaggttttgaagtattatctttcactattttcttgttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtt 193  Q
    |||||||||||||| |||| |||| || ||||||||||||||| || ||||||||| ||||||||||||||  |  |||||||||||||||| |||||||    
T  48864684 agaagaatgaggttgtgaaatattctccttcactattttcttgatatttatattgtgttatgaactcttggatgactgcatttgtagggtaccatgtgtt 48864783  T
Q  194 t 194  Q
    |    
T  48864784 t 48864784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 45365703 - 45365620
Alignment:
Q  17 tcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaa 100  Q
    |||||||| |||||| ||||||||| || | ||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  45365703 tcaagtggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45365620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 7801217 - 7801333
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtatta 118  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||  ||||||||| ||||||||  |||| ||| |    
T  7801217 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggtactgaaatatca 7801315  T
Q  119 tctttcactattttcttg 136  Q
    || ||||| |||||||||    
T  7801316 tcattcaccattttcttg 7801333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 7823549 - 7823661
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtatta 118  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||  ||||||||| ||||||||  |||| ||| |    
T  7823549 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggtactgaaatatca 7823647  T
Q  119 tctttcactatttt 132  Q
    || ||||| |||||    
T  7823648 tcattcaccatttt 7823661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 45371544 - 45371435
Alignment:
Q  27 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcac 126  Q
    ||||| |||||||||||| |||||||| || |  ||||||| |||||||||||||||| | || |||||| |||||||||| | || ||||| | ||| |    
T  45371544 atgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatggcacagacaagatgaatgaggttgtaaaatattacccttccc 45371445  T
Q  127 tattttcttg 136  Q
    ||||||||||    
T  45371444 tattttcttg 45371435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 49106176 - 49106117
Alignment:
Q  138 taattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttgaa 197  Q
    |||||||||||||||||||||||||| | ||||||||||||||  || ||||||||||||    
T  49106176 taattatattgtattatgaactcttgagtggttgcatttgtagattagtatgtgtttgaa 49106117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 7909004 - 7909062
Alignment:
Q  138 taattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||| ||| |||||||    
T  7909004 taattatattgtattttgaactcttgggtggttgcatttttagggtagtatatgtttga 7909062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 7814057 - 7814169
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtatta 118  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||  ||| ||||| ||||||||  |||| ||| |    
T  7814057 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaaaaagaa-aatgaggtactgaaatatca 7814155  T
Q  119 tctttcactatttt 132  Q
    || ||||| |||||    
T  7814156 tcattcaccatttt 7814169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7908876 - 7908937
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaa 80  Q
    |||| |||||||| || ||||||||| |||||||||||||| |||||||||||| |||||||    
T  7908876 aagttgtcatgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaagaa 7908937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 50673395 - 50673516
Alignment:
Q  24 gtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatcttt 123  Q
    |||||| | |||||||||||| ||||||||||   ||| |  ||||||| | | ||| |||||||||||| ||||||||||||||| || |||| || ||    
T  50673395 gtcatgcatacagagtctctgctttcactcccgcctaatagagagcaagttgatgaaaatgactcaaacatgaagaatgaggttttaaaatattttcctt 50673494  T
Q  124 cactattttcttgttaattata 145  Q
    ||| ||||||||| || |||||    
T  50673495 caccattttcttgatatttata 50673516  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 48734801 - 48734725
Alignment:
Q  128 attttcttgttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttgaactttgaatgcattt 211  Q
    ||||||||| || |||||||| |||||||||||||||||      ||||||||||||| ||||||||||| |||||||||||||    
T  48734801 attttcttgatatttatattgcattatgaactcttgggc------atttgtagggtaccatgtgtttgaa-tttgaatgcattt 48734725  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 48863848 - 48863906
Alignment:
Q  28 tgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgac 86  Q
    |||| |||||||||||| |||||||||||  | ||| ||||||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgac 48863906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 49040622 - 49040552
Alignment:
Q  36 gagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 106  Q
    ||||||||| ||||||||||   | ||| | |||||||||||||||||| | |||||||||||||||||||    
T  49040622 gagtctctgctttcactccccaatgacagttagcaagcttaagaagatggcacaaacaagaagaatgaggt 49040552  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 7787074 - 7787167
Alignment:
Q  19 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 112  Q
    |||| ||| |||| |||||||||||  |||||||| | ||| || ||||||| | ||||||||||||| || ||||||| ||||||||| ||||    
T  7787074 aagttgtcgtgtatacagagtctctactttcactctccggtgacgatgagcatgtttaagaagatgacacagacaagaacaatgaggttgtgaa 7787167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 48899341 - 48899496
Alignment:
Q  37 agtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcactattttcttg 136  Q
    |||||||| |||||||   |||| ||||| |||| || || |||||||||  |||||||||||| ||||||||||| |||| || || || |||||||||    
T  48899341 agtctctgctttcact---tggtgacaattagcaggcataggaagatgacataaacaagaagaaggaggttttgaaatattctcctttaccattttcttg 48899437  T
Q  137 ttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
     || |||| || | || || ||||| ||| || ||||||||  ||||| |||||||||||    
T  48899438 atatttatgtt-ttttttgtactctcgggtggctgcatttgcggggtagtatgtgtttga 48899496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 7773144 - 7773088
Alignment:
Q  138 taattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
    ||||||||||||||||||||||||  |  |||||||||||||||| | |||||||||||    
T  7773144 taattatattgtattatgaactct--gatggttgcatttgtagggcaatatgtgtttga 7773088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 7790660 - 7790739
Alignment:
Q  25 tcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 104  Q
    ||||||| ||||| |||||| ||||||| | |||| |||||||||| | ||||||||||| | ||||||| || ||||||    
T  7790660 tcatgtatacagaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaaaaacaatgag 7790739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 48147187 - 48147116
Alignment:
Q  26 catgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 97  Q
    |||||| || ||||||||| ||||||||||| || |||||| || | | |||||||||||| ||||||||||    
T  48147187 catgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaa 48147116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 48856803 - 48856858
Alignment:
Q  359 agaatgaacattgaattcttgtcaatttgatattccaatga-ccctcttacatttt 413  Q
    ||||| |||||||| ||| ||||||||||||||||||| || ||||||||||||||    
T  48856803 agaataaacattgacttcctgtcaatttgatattccaacgacccctcttacatttt 48856858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 48903548 - 48903619
Alignment:
Q  35 agagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 106  Q
    |||||||||  |||||||||||||| ||| | |||||| ||||||||||| |  ||| ||||||||||||||    
T  48903548 agagtctctattttcactccctggtgacattaagcaagtttaagaagatggcataaataagaagaatgaggt 48903619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 7771974 - 7772044
Alignment:
Q  24 gtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaa 94  Q
    |||||||| ||||| |||||| ||||||| | |||| |||||||||| | ||||||||||| | |||||||    
T  7771974 gtcatgtatacagaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaa 7772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 50669653 - 50669775
Alignment:
Q  10 ttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggtttt 109  Q
    |||||||  ||||||  ||||| |||||||||||  |||||||||| | |  | |||| |||| | || |||||||| |||||||||||||  |||||||    
T  50669653 ttggatccaaagtggctatgtatacagagtctctactttcactccccgctgtccatgaacaagttcaaaaagatgacacaaacaagaagaacaaggtttt 50669752  T
Q  110 gaagtattatctttcactatttt 132  Q
    ||| |||| || ||||| |||||    
T  50669753 gaaatattctccttcaccatttt 50669775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 9120357 - 9120463
Alignment:
Q  33 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaac---aagaagaatgaggttttgaagtattatctttcactat 129  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||| ||||||| |||||   |||||||||||||||||||| |||| || ||||| ||    
T  9120357 acagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaatattctccttcaccat 9120456  T
Q  130 tttcttg 136  Q
    |||||||    
T  9120457 tttcttg 9120463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 29696869 - 29697002
Alignment:
Q  69 caagcttaagaagatgactcaaacaagaagaatgaggttttgaagtattatctttcactattt------tcttgttaattatattgtattatgaactctt 162  Q
    |||| |||||||||||||  || |||||||||||||||||||||||||| |  ||||| ||||      ||||  |||||||||||||||||| ||||||    
T  29696869 caagtttaagaagatgacagaaccaagaagaatgaggttttgaagtattcttcttcaccattttcatgatctttataattatattgtattatggactctt 29696968  T
Q  163 gggcggttgcatttgtagggtactatgtgtttga 196  Q
    | |  | ||||||||||||||| ||| |||||||    
T  29696969 gagtagctgcatttgtagggtaatatatgtttga 29697002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 29688698 - 29688889
Alignment:
Q  11 tggatctcaagtggtcatgtacacagagtctctgatttcactccctggta---acaatgagcaagcttaagaagatgactcaaacaagaagaatgaggtt 107  Q
    |||||| | |||||| ||||| ||||| |||||| ||||||| ||||||    ||| ||| || ||||||||||||||| || |||||||   |||||||    
T  29688698 tggatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaa---tgaggtt 29688794  T
Q  108 ttgaagtattatctttcactattttcttgtt------aattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
    || |||||||  | ||||| |||||| || |      |||||||| |||||||| ||||||| | || |||||| |||||||| |||||||||||    
T  29688795 ttcaagtattccccttcaccattttcatgatctttataattatatagtattatgtactcttgagtggctgcattcgtagggtaatatgtgtttga 29688889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 11014974 - 11014798
Alignment:
Q  20 agtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaagtatt-a 118  Q
    |||||| |||||||||||||||||| |||||||||||||| ||| || ||||  ||   |||||||| || | ||||||||||||||| ||||| |||      
T  11014974 agtggttatgtacacagagtctctgctttcactccctggtgacagtgggcaatttt---aagatgacacagagaagaagaatgaggttgtgaagcattct 11014878  T
Q  119 tctttcactattt--tcttgttaattatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
    ||||  |||  ||  | ||  |||||||||| |||||| |||||||||| || ||||||||| ||||| |||||||||||    
T  11014877 tcttcaacttcttgatatttataattatattatattataaactcttgggtggctgcatttgttgggtaatatgtgtttga 11014798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 47451382 - 47451323
Alignment:
Q  18 caagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaa 77  Q
    |||||||| |||||||||||||||||| ||||||| || ||| |||||||||||||||||    
T  47451382 caagtggttatgtacacagagtctctgctttcacttcccggtgacaatgagcaagcttaa 47451323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 24340999 - 24341076
Alignment:
Q  27 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 104  Q
    ||||| || |||||| || ||||||||||| || |||||||| ||||||||||||||| | |||||||||||||||||    
T  24340999 atgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 24353364 - 24353441
Alignment:
Q  27 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 104  Q
    ||||| || |||||| || ||||||||||| || |||||||| ||||||||||||||| | |||||||||||||||||    
T  24353364 atgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 48884415 - 48884607
Alignment:
Q  18 caagtggtcatgtacacagagtctctgatttcactccct-------ggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatg-aggtttt 109  Q
    ||||| ||||||||||||||||||||  ||||||| |||       ||| |||||||| ||| ||||||| ||||| ||||||||||||||  ||||| |    
T  48884415 caagtcgtcatgtacacagagtctctactttcacttcctaataagtggtgacaatgagaaagtttaagaaaatgacacaaacaagaagaatacaggttat 48884514  T
Q  110 gaagtattatctttcactattttcttgttaattata------ttgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 196  Q
     || |||| ||||||| | |||||||| || |||||      ||| ||||||||||||| || || ||||||||||| ||| |||||||||||    
T  48884515 aaaatattctctttcattgttttcttgatatttataactatattgcattatgaactctttggtggctgcatttgtagagtaatatgtgtttga 48884607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 21016393 - 21016476
Alignment:
Q  11 tggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaa 94  Q
    |||||||| |||||   |||| ||||||||| || |||||||||||| | |||| || |||| ||||||||||||| |||||||    
T  21016393 tggatctcgagtggctgtgtatacagagtctttgctttcactccctgatgacaacgaccaagattaagaagatgacacaaacaa 21016476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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