View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685R-Insertion-9 (Length: 468)

Name: NF2685R-Insertion-9
Description: NF2685R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685R-Insertion-9
NF2685R-Insertion-9
[»] chr5 (4 HSPs)
chr5 (9-468)||(36243586-36244036)
chr5 (396-468)||(26682879-26682950)
chr5 (384-467)||(42141257-42141339)
chr5 (384-468)||(41700906-41700990)
[»] chr3 (2 HSPs)
chr3 (355-426)||(3650658-3650728)
chr3 (384-424)||(32993899-32993939)
[»] chr4 (3 HSPs)
chr4 (354-437)||(9024427-9024509)
chr4 (361-468)||(11975462-11975569)
chr4 (393-441)||(50376067-50376115)
[»] chr2 (2 HSPs)
chr2 (354-424)||(9467891-9467964)
chr2 (414-468)||(40897470-40897524)
[»] scaffold0210 (2 HSPs)
scaffold0210 (354-438)||(17877-17962)
scaffold0210 (354-438)||(25769-25854)
[»] chr8 (1 HSPs)
chr8 (384-424)||(26149210-26149250)
[»] chr6 (2 HSPs)
chr6 (371-424)||(18235259-18235312)
chr6 (384-425)||(19225429-19225470)
[»] chr1 (1 HSPs)
chr1 (384-424)||(45807361-45807401)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 36243586 - 36244036
Alignment:
Q  9 gcatgcatcttccatgtttgtcagattcacacgacatatgattaagagaagagtgattcacatgatgcatgatacgaaggatctgttgaatgagtaagaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||    
T  36243586 gcatgcatcttccatgtttgtcagattcacacgacatatgat---------------tcacatgatgcatgatacgaaggatctgttgaatgagtaagaa 36243670  T
Q  109 acagaaatgtctaacactacactcactcaaaccaaactcatgacagcctttgagtcatactcaatgtcaatagctctaaaatatcgatcaaatgtcaact 208  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36243671 acagaaatgtctagcactacactcattcaaaccaaactcatgacagcctttgagtcatactcaatgtcaatagctctaaaatatcgatcaaatgtcaact 36243770  T
Q  209 tcagggcctttgacggtaacccgaaattttgttcataatatatgtaatcataggttnnnnnnncttaatagttataaataatgatatcatatactactcc 308  Q
    ||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||    
T  36243771 tca-ggcccttgacggtaacccgaaattttgttgataatatatgtaattataggttaaaaaaacttaatagttataaataatgatatcatatactactcc 36243869  T
Q  309 actttctttgtcccactatcag---------tgacggagccagnnnnnnnnntacttggatgggccactacattataaaacttgtttttatagtacaaat 399  Q
    |||||||||||||||||||| |         || ||||| |||         ||||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  36243870 actttctttgtcccactatcggtctcattcatggcggagtcag--gaaaaaatacttgggtgggccactacattatgaaacttatttttatagtaaaaat 36243967  T
Q  400 gttaattgaaacaatttttagttgacatagaatataaaggagattcgaaatgccccgcaaattagaagg 468  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||    
T  36243968 gttaattggaacaaattttagttgacataaaatataaaggagatttgaaacgccccacaaattagaagg 36244036  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 26682879 - 26682950
Alignment:
Q  396 aaatgttaattgaaacaatttttagttgacatagaatataaaggagattcgaaatgccccgcaaattagaagg 468  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| || ||||  |||| ||||||||||||    
T  26682879 aaatgttaattgaaacaatttttagttaacatacaatataaaggaggtttgaaa-cccccacaaattagaagg 26682950  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 467
Target Start/End: Complemental strand, 42141339 - 42141257
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaaggagattcgaaatgccccgcaaattagaag 467  Q
    |||||||| ||||||||||||||| ||||||||| ||||| || | ||||||| |||| || ||||  |||| |||||||||||    
T  42141339 tttttataatacaaatgttaattggaacaattttcagttgccaaacaatataagggaggtttgaaa-cccccacaaattagaag 42141257  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 41700990 - 41700906
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaaggagattcgaaatgccccgcaaattagaagg 468  Q
    |||||||| || ||||||| |||| ||||||||| |||||||| | ||||||| |||| || ||||  || | ||||||||||||    
T  41700990 tttttataatataaatgttgattggaacaattttaagttgacaaacaatataagggaggtttgaaacccctcacaaattagaagg 41700906  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 3650728 - 3650658
Alignment:
Q  355 ttggatgggccactacattataaaacttgtttttatagtacaaatgttaattgaaacaatttttagttgaca 426  Q
    ||||||| ||| ||| ||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  3650728 ttggatgtgccgctaaattatgaaactt-tttttataatacaaatgttaattggaacaatttttagttgaca 3650658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 32993899 - 32993939
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttga 424  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  32993899 tttttatagtataaatgtttattgaaacaaattttagttga 32993939  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 9024509 - 9024427
Alignment:
Q  354 cttggatgggccactacattataaaacttgtttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaa 437  Q
    ||||| ||||||||||  |||| ||||||||||| | |||||||||||||||| |||||||||||| |||| ||| || |||||    
T  9024509 cttgggtgggccactaagttatgaaacttgtttt-acagtacaaatgttaattaaaacaatttttatttgatatacaacataaa 9024427  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 468
Target Start/End: Original strand, 11975462 - 11975569
Alignment:
Q  361 gggccactacattataaaacttgtttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaaggagattcgaaatgccccgcaaa 460  Q
    ||||||||| ||||| ||  || ||||| ||||| |||||||||||||||| | |||||||||| | | ||| |||||||| || ||||  |||| ||||    
T  11975462 gggccactaaattatgaaggttttttttctagtataaatgttaattgaaaccagttttagttgagagacaatgtaaaggaggtttgaaaccccccacaaa 11975561  T
Q  461 ttagaagg 468  Q
    ||||||||    
T  11975562 ttagaagg 11975569  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 50376067 - 50376115
Alignment:
Q  393 tacaaatgttaattgaaacaatttttagttgacatagaatataaaggag 441  Q
    ||||||||||||||| ||||||||| |||||||| | ||||||| ||||    
T  50376067 tacaaatgttaattggaacaattttcagttgacaaacaatataagggag 50376115  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 9467964 - 9467891
Alignment:
Q  354 cttggatgggccactacattataaaacttgttttt---atagtacaaatgttaattgaaacaatttttagttga 424  Q
    ||||||||| |||||| ||||| |||||| |||||   ||||||||||| ||||||||||||| ||||||||||    
T  9467964 cttggatggaccactaaattatgaaactttttttttttatagtacaaatattaattgaaacaagttttagttga 9467891  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 40897470 - 40897524
Alignment:
Q  414 tttttagttgacatagaatataaaggagattcgaaatgccccgcaaattagaagg 468  Q
    ||||||||||||||| |||||||||||| || ||||  |||| ||||||||||||    
T  40897470 tttttagttgacatacaatataaaggaggtttgaaaccccccacaaattagaagg 40897524  T

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Target: scaffold0210 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 17877 - 17962
Alignment:
Q  354 cttggatgggccactacattataaaacttg-tttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaag 438  Q
    ||||||||| |||||| ||||| ||||||| ||||||  |||||||| ||||||| ||||||||||| |||||  | |||||||||    
T  17877 cttggatggaccactaaattatgaaacttgatttttacggtacaaattttaattggaacaatttttaattgacggacaatataaag 17962  T

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Target: scaffold0210; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 25769 - 25854
Alignment:
Q  354 cttggatgggccactacattataaaacttg-tttttatagtacaaatgttaattgaaacaatttttagttgacatagaatataaag 438  Q
    ||||||||| |||||| ||||| ||||||| ||||||  |||||||| ||||||| ||||||||||| |||||  | |||||||||    
T  25769 cttggatggaccactaaattatgaaacttgatttttacggtacaaattttaattggaacaatttttaattgacggacaatataaag 25854  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 26149210 - 26149250
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttga 424  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  26149210 tttttacagtacaaatgttaattgaaacaagttttagttga 26149250  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 18235312 - 18235259
Alignment:
Q  371 attataaaacttgtttttatagtacaaatgttaattgaaacaatttttagttga 424  Q
    ||||| || ||| |||||||||||||||| |||||||||| || ||||||||||    
T  18235312 attatgaagcttttttttatagtacaaattttaattgaaataagttttagttga 18235259  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 19225429 - 19225470
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttgac 425  Q
    ||||| ||||||||| |||||||| |||||||||||||||||    
T  19225429 tttttttagtacaaacgttaattggaacaatttttagttgac 19225470  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 45807401 - 45807361
Alignment:
Q  384 tttttatagtacaaatgttaattgaaacaatttttagttga 424  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  45807401 tttttttagtaaaaatgttaattgaaacaagttttagttga 45807361  T

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