View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_1 (Length: 678)
Name: NF2686_high_1
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 396 - 676
Target Start/End: Complemental strand, 36773786 - 36773506
Alignment:
| Q |
396 |
ctgcaggcgacacacggacgatgatggagtatcaaagtgactacttgatgttgtaactgatgtaattgcatatcattatttacagcattgtagtagtatg |
495 |
Q |
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| T |
36773786 |
ctgcaggcgacacacggacgatgatggaggatcaaagtgactacttgatgttgtaactgatgtaattgcatatcattatttacagcattgtagtagtatg |
36773687 |
T |
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| Q |
496 |
aatatctcttattccattgcataaaaataaaaatagtatttgacacattttgatagttacatatttccattttgatatatcaaaaaattttacattactt |
595 |
Q |
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| T |
36773686 |
aatatctcttattccattgcataaaaataaaaatagtatttgacacattttgatagttacatatttccattttgatatatcaaaaaaatttacattactt |
36773587 |
T |
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| Q |
596 |
tagaatcaagcctaagtataatttttaaacacacttttaaaggaaaaaccctatgatgacccgattttcattcaacctatg |
676 |
Q |
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| T |
36773586 |
tagaatcaagcctaagtataatttttaaacacacttttaaaggaaaaaccctatgatgacccgattttcgttcaacctatg |
36773506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 129 - 333
Target Start/End: Complemental strand, 36774070 - 36773864
Alignment:
| Q |
129 |
cccttcttgccttctctcattattgaatctaattcatgcttataacagaccacaaaagttttattttacttctcgttcttcctacaaggcatgcacttat |
228 |
Q |
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| T |
36774070 |
cccttcttgccttctctcgttattgaatctaattcatgcttataacagaccacaaaagttttattttacttctcgttcttcctacaaggcatgcacttat |
36773971 |
T |
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| Q |
229 |
ttggtctttggcttttcgggt--cgattatctcaatgttatgtctttctcttttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaatt |
326 |
Q |
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| T |
36773970 |
ttggtctttggcttttcgggttccgattatctcaatgttatgtctttctcttttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaatc |
36773871 |
T |
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| Q |
327 |
aatggca |
333 |
Q |
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| T |
36773870 |
aatggca |
36773864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 36774234 - 36774125
Alignment:
| Q |
20 |
gcacttattagttaaactggtttatgtgaagtagtatatgatacattattttcatcttaattagttcctctagtttgatcatggaccctatttcaacttc |
119 |
Q |
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| T |
36774234 |
gcacttattagttaaactggtttatgtgaagtagtatatgatacattattttcatcttaattagttcctctagtttgatcatggaccctatttcaacttc |
36774135 |
T |
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| Q |
120 |
tgaacagggc |
129 |
Q |
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|||||||||| |
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| T |
36774134 |
tgaacagggc |
36774125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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