View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_10 (Length: 415)
Name: NF2686_high_10
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 25154522 - 25154798
Alignment:
| Q |
1 |
cagggtaagagccgaaaagaatataataatattggatgatgacagggttcatcataagaataatgaacctttcatggaaggtttaagtaatacaaatcaa |
100 |
Q |
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| T |
25154522 |
cagggtaaaagccgaaaagaatataataatattggatgatgacagggttcatcataagaataatgaacctttcatggaaggtttaagtaatacaaatcaa |
25154621 |
T |
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| Q |
101 |
aaggtaaaagtaatcagaagaacgaaaaagttaggtgtataaataatatgttggcttaggaaaaagataatgttaattttgtacttaattgaaacttttc |
200 |
Q |
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| T |
25154622 |
aaggtaaaagtaatcataagaacgaaaaagttaggtgtataaataatatgttggcttaggaaaaagataatgttaattttgtacttaattgaaacttttc |
25154721 |
T |
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| Q |
201 |
catacaacgaagctgattattgctgcaaacctcaatcaaaggatgagtacaattgttgactcctagccataacataaa |
278 |
Q |
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| T |
25154722 |
catacaacgaagctaattattgctacaaacct-aatcaaaggatgagtacaattgttgcctcctagccataacataaa |
25154798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 25148286 - 25148440
Alignment:
| Q |
1 |
cagggtaagagccgaaaagaatataataatattggatgatgacagggttcatcataagaataatgaacctttcatggaaggtttaagt-aatacaaatca |
99 |
Q |
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| T |
25148286 |
cagggtaaaagcgaaaaaaaatataataatattggatgatgacaacgttcatcataagaataatgaacctttcatagaaggtttaagtaaatataaatca |
25148385 |
T |
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| Q |
100 |
aaaggtaaaagtaatc----agaagaacgaaaaagttaggtgtataaataatatgt |
151 |
Q |
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| T |
25148386 |
aaa-gtaacagtaatcatatataagagcgacaaagttaggtgtgtaaataatatgt |
25148440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 25154845 - 25154915
Alignment:
| Q |
326 |
agaggattacagtaaattactcatgtttttgggaagaagtttgtaatgttttattatagtcattatatgcc |
396 |
Q |
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| T |
25154845 |
agaggattacagtaaattactcatgtttttgggaagaagtttgtaatgttttattatagtcattatatgcc |
25154915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 25149213 - 25149274
Alignment:
| Q |
332 |
ttacagtaaattactcatg--tttttgggaagaagtttgtaatgttttattatagtcattat |
391 |
Q |
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| T |
25149213 |
ttacattaaattactcatgaatttttgggaagaagtttgtaatgttttattatagtcattat |
25149274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 25153493 - 25153578
Alignment:
| Q |
4 |
ggtaagagccgaaaagaatataataatattggatgatgacagggttcatcataagaataatgaacctttcatggaaggtttaagtaat |
91 |
Q |
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| T |
25153493 |
ggtaaaagccgaacaaaatataattatattggatgatgaa--gcttcatcataagaacaatgaacctttctttgaaggtttaagtaat |
25153578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 25153600 - 25153744
Alignment:
| Q |
130 |
gttaggtgtataaataatatgttggcttaggaaaaagataatgttaattttgtacttaattgaaacttttccatacaacgaagctgattattgctgcaaa |
229 |
Q |
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| T |
25153600 |
gttaggtgtgtaaataatgtgtaggcttagaataaagatatagttaattttgaactt--ttggaacttccccatacaatgacattgattactgctacaaa |
25153697 |
T |
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| Q |
230 |
cctcaatcaaaggatgagtacaattgttgactcctagccataacata |
276 |
Q |
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| T |
25153698 |
ccctgatcaaaggatgagtaaaactgatgactcctggccataacata |
25153744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 25152902 - 25152963
Alignment:
| Q |
77 |
gaaggtttaagtaatacaaatcaaaaggtaaaagtaatcagaagaacgaaaaagttaggtgt |
138 |
Q |
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| T |
25152902 |
gaaggtttaagtaatataaatcaaaatgtgaaaataatcaaaaaagcgataaagttaggtgt |
25152963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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