View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_11 (Length: 408)
Name: NF2686_high_11
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 39073675 - 39073306
Alignment:
| Q |
18 |
gttgttgttgattttgaggagtggattgaagcaacttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccat |
117 |
Q |
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| T |
39073675 |
gttgttgttgattttgaggagtggattgaagcaacttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccat |
39073576 |
T |
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| Q |
118 |
tttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgatt |
217 |
Q |
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| T |
39073575 |
tttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgatt |
39073476 |
T |
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| Q |
218 |
cgaacgtttcttcgttttggttttcgaatcgttgctgggtcgatgtccaccggttgcatagctgcaatcttgtacatcatttccttcatagctcctaact |
317 |
Q |
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| T |
39073475 |
cgaacgtttcttcgttttggttttcgaatcgttgctgggtcgatgtccaccggttgcatagctgcaatcttgtacatcatttccttcatagctcctaact |
39073376 |
T |
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| Q |
318 |
cttcttcttgttcttctacgtcttcgattcgatggatccctaagatgtcactgagtgaacctgatgaaga |
387 |
Q |
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| T |
39073375 |
cttcttcttgttcttctacgtcttcgattcgatggatccctaagatgtcactgagtgaacctgatgaaga |
39073306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 6259729 - 6259580
Alignment:
| Q |
58 |
ttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatc |
157 |
Q |
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| T |
6259729 |
ttgtttcttcaaaaacttcacataatgtattgcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatctttgtaatatccttatt |
6259630 |
T |
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| Q |
158 |
ttctcactgattctttctcttctatgtctagctgcaacactttgtggatc |
207 |
Q |
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| T |
6259629 |
ctttcactaattctttctcttctatgtcttgctgctacactttgtggatc |
6259580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 46899443 - 46899304
Alignment:
| Q |
70 |
aaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgatt |
169 |
Q |
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| T |
46899443 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttatt |
46899344 |
T |
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| Q |
170 |
ctttctcttctatgtctagctgcaacactttgtggatctt |
209 |
Q |
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| T |
46899343 |
ctttctcttctgtgtctagctgctatactctgaggatctt |
46899304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 25645275 - 25645321
Alignment:
| Q |
161 |
tcactgattctttctcttctatgtctagctgcaacactttgtggatc |
207 |
Q |
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| T |
25645275 |
tcactgattctatgtcttctttctctagctgcaacactttgtggatc |
25645321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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