View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_13 (Length: 379)
Name: NF2686_high_13
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 31360961 - 31361316
Alignment:
| Q |
11 |
cacagacatagaataattgttcattagatgattgcattaggaatattgaattgtctacatgtgatatagaaaattggtgttcactatgtgttttagaaca |
110 |
Q |
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| T |
31360961 |
cacagacatagaataattgttcattagatgattgcattaggaatattgaattgtctacatgtgatatagaaaattggtgttcactatgtgttttagaaca |
31361060 |
T |
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| Q |
111 |
ttaattcatgttttggatcgaacaaaggcccaacccgccacaaattagtacccttttctatagaggacaaaatgagtagaatcttctcatcctcacctcg |
210 |
Q |
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| T |
31361061 |
ttaattcatgttttggatcgaacaaaggcccaacccgccacaaattagtacccttttctatagaggacaaaatgagtagaatcttctcatcctcacctcg |
31361160 |
T |
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| Q |
211 |
gatccacttgagcccataatgcctcataacggtcagtccgtcataacggctgcccgtcataacccaacccaacgactcttttcacggtaaaccttcattc |
310 |
Q |
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| T |
31361161 |
gatccacttgagcccataatacctcataacggtcagtccgtcataacggctgcccgtcataacccaacccaacgactcttttcacggtaaaccttcattc |
31361260 |
T |
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| Q |
311 |
ttgctgatatatacctacttgaatgtttgaattcctacatgtacaaccccctttct |
366 |
Q |
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| T |
31361261 |
ttgctgatatatacctacttgaatgtttgaattcctacatgtacaaccccctttct |
31361316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 31376585 - 31376642
Alignment:
| Q |
187 |
tagaatcttctcatcctcacctcggatccacttgagcccataatgcctcataacggtc |
244 |
Q |
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| T |
31376585 |
tagaattttctcattctcacctcggatcctctcgatcccataatgcctcataacggtc |
31376642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 31327919 - 31327975
Alignment:
| Q |
188 |
agaatcttctcatcctcacctcggatccacttgagcccataatgcctcataacggtc |
244 |
Q |
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| T |
31327919 |
agaattttctcattctcacctcggatcctctcgatcccataatgcctcttaacggtc |
31327975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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