View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_15 (Length: 363)
Name: NF2686_high_15
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 90 - 354
Target Start/End: Complemental strand, 15452097 - 15451827
Alignment:
| Q |
90 |
aaggatgaaaagtgatttgatttgataattgctttcaggtgaactccattggaaaattgtgtcagtttatataaacagaacgaaccaggtataatatttg |
189 |
Q |
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| T |
15452097 |
aaggatgaaaagtgatttgatttgataattgattgcaggtgaactccattggaaaattgtgtcagtttatataaacagaacgaaccaggtataatatttg |
15451998 |
T |
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| Q |
190 |
agaattattccttttcttttcatttcaattatgtaatgtgag--------tttggatcttgactatgaccaattatttggccatcaattatatgagattt |
281 |
Q |
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| T |
15451997 |
agaattattccttttcttttcatttcaattatgtaatgtgagtatgtgactttggatcttgactatgaccaattatttggccatcaattatatgagattt |
15451898 |
T |
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| Q |
282 |
aatgatgaataaaagaatctggtagtggaaagaagtgactaaagtgagggctcttagaacgatgtgatgatgt |
354 |
Q |
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| T |
15451897 |
aatgatgaat--aagaatctggtagtggaaagaagtgactaaagtgagggctcttagaacgatgtgatgatgt |
15451827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15452186 - 15452139
Alignment:
| Q |
1 |
tcccattatatgtcctatgcttctgtatgcggattaaagaaaaggatc |
48 |
Q |
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| T |
15452186 |
tcccattatatgtcctatgcttctgtatgcggattaaagaaaaggatc |
15452139 |
T |
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