View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2686_high_16 (Length: 341)

Name: NF2686_high_16
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2686_high_16
NF2686_high_16
[»] chr1 (1 HSPs)
chr1 (15-341)||(4555617-4555943)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 4555943 - 4555617
Alignment:
Q  15 acctgtgcagtgctgtattcatcatccttttcaacaaatggatagcacacttgaatgtctcctttacctcccacaaagcggaatgcagttgcgaacaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4555943 acctgtgcagtgctgtattcatcatccttttcaacaaatggatagcacacttgaatgtctcctttacctcccacaaagcggaatgcagttgcgaacaaca 4555844  T
Q  115 ttgccttctggttcacataaatatcaaatcagcaaagtagaagagtttgtagcttcaactacaagaaataacgctgaagttggttttataacgctcataa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4555843 ttgccttctggttcacataaatatcaaatcagcaaagtagaagaatttgtagcttcaactacaagaaataacgctgaagttggttttgtaacgctcataa 4555744  T
Q  215 agtttgtaaagcaagcaagttactagcaatttttaatttattcattttaaatctgcgttttctgcggtcacaaagtcactgcagtcatgaaatcgacatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4555743 agtttgtaaagcaagcaagttactagcaatttttaatttattcattttaagtctgcgttttctgcggtcacaaagtcactgcagtcatgaaatcgacatt 4555644  T
Q  315 attgttaattagataaaaatcagacga 341  Q
    ||||||||||||||||| |||||||||    
T  4555643 attgttaattagataaagatcagacga 4555617  T

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