View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_24 (Length: 252)
Name: NF2686_high_24
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30624150 - 30624391
Alignment:
| Q |
1 |
tttgtgcattttggttcaagggaagagttttgttgttgtcttcattgaagctaaagaaatcttcccatgaaaagtattctaaaaaagaagaggtatttga |
100 |
Q |
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| T |
30624150 |
tttgtgcactttggttcaagggaagagttttgttgttgtcttcattgaagctaaagaaatcttcccatgaaaaggattctaaaaaagaagaggtatttga |
30624249 |
T |
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| Q |
101 |
aaatgaagtgtcaaggttttggtattggaattggaagaatgaagaatcaaaatccatgtcttgtgtgaatctnnnnnnnttagacaccaaattaaagtgt |
200 |
Q |
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| T |
30624250 |
aaatgaagtgtcaaggttttggtattggatttggaagaatgaagaatcaaaatccatgtcttgtgtgaatctaaaaaaattagacaccaaattaaagtgt |
30624349 |
T |
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| Q |
201 |
tttgtattgtttattttcttaactactttctttctttctgtg |
242 |
Q |
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| T |
30624350 |
tttgtattgtttattttcttaactactttctttctttctgtg |
30624391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 30629829 - 30629963
Alignment:
| Q |
31 |
tgttgttgtcttcattgaagctaaagaaatcttcccatgaaaagtattctaaaaaagaagaggtatttgaaaatgaagtgtcaaggttttggtattggaa |
130 |
Q |
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|||||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
30629829 |
tgttgttgtcttcattgaagaaaaagaaatcgtccaatgaaaaggattctaaaaaagaagaggaattttcaaatgaagtgtcaaggttttggtattggaa |
30629928 |
T |
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| Q |
131 |
ttggaagaatgaagaatcaaaatccatgtcttgtg |
165 |
Q |
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| T |
30629929 |
ttggaagaatgaagattcaaaatccatgtcttgtg |
30629963 |
T |
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