View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_3 (Length: 533)
Name: NF2686_high_3
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_3 |
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| [»] scaffold0180 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 107 - 490
Target Start/End: Original strand, 14487972 - 14488355
Alignment:
| Q |
107 |
ggaaagttactttttaaccattagatcgattatggaacacacttttatcatagtctctctacactatatctttttacacaccatcatcaattatcattct |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14487972 |
ggaaagttactttttaaccattagattgattatggaacacacttttatcatagtctctctacactatatctttttacacaccatcatcaattatcattct |
14488071 |
T |
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| Q |
207 |
ctctcctccatcccactcacctccatgagcaacaacataggattgatagtcccgaattctcattcttcccttgtttgtac-ttttcattgttaatttaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
14488072 |
ctctcctccatcccactcacctccatgagcaacaacataggattgacattcccgaattctccttcttcccttgtttgtactttttcattgttaatttaat |
14488171 |
T |
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| Q |
306 |
ttctttaaaatggaataaaaaacaagaaagtctcacacaccacaaataaaatagttgttgaccatctaacatcgcctgcaatgannnnnnnctcaggtta |
405 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
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| T |
14488172 |
ttctttaaaatagaataaaaaacaagaaagtctcacacaccacaaataaaatagttgttgacagtctaacatcgcctgcaatgatttttttctcagg-ta |
14488270 |
T |
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| Q |
406 |
tggaaatctagaaaccctttgttcttcatctttgtttctatgattttttataccctttgctattcacgttttttcaatctagaaa |
490 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
14488271 |
tggaaatctagaaaacctttgttcttcatctttgtttctatgattttttataccctttgatattcacgttttttcaatctggaaa |
14488355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 110 - 361
Target Start/End: Original strand, 573426 - 573669
Alignment:
| Q |
110 |
aagttactttttaaccattagatcgattatggaacacacttttatcatagtctctctacactatatctttttacacaccatcatcaattatcattctctc |
209 |
Q |
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|||||| ||||||||||||||||| | || | |||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
573426 |
aagttattttttaaccattagatcaactaagaaacacatttttatcatagtctctttacactatat-tttttacacac-atcatcaattatcattctctc |
573523 |
T |
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| Q |
210 |
tcctccatcccactcacctccatgagcaacaacataggattgatagtcccgaattctcattcttcccttgtttgtacttttcattgttaatttaatttct |
309 |
Q |
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|||||||| ||||||||||||||||||||||| | | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
573524 |
ccctccatctcactcacctccatgagcaacaac------tcaactgtcccaaattctacttcttcccttgtttgtacttttcattgttaatttaatttct |
573617 |
T |
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| Q |
310 |
ttaaaatggaataaaaaacaagaaagtctcacacaccacaaataaaatagtt |
361 |
Q |
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||||||| |||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
573618 |
ttaaaataaaataaaaaacaagaaagttccacataccacagataaaatagtt |
573669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 573772 - 573830
Alignment:
| Q |
400 |
aggttatggaaatctagaaaccctttgttcttcatctttgtttctatgattttttatac |
458 |
Q |
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| T |
573772 |
aggttatggaaatctagaaaccctttgttcttcatctttgtttctccgattttctatac |
573830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 573672 - 573728
Alignment:
| Q |
400 |
aggttatggaaatctagaaaccctttgttcttcatctttgtttctatgattttttat |
456 |
Q |
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| T |
573672 |
aggttatggaaatctgaaaactctttgttcttcatctttgtttctatgattttttat |
573728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 46357952 - 46357992
Alignment:
| Q |
141 |
gaacacacttttatcatagtctctctacactatatcttttt |
181 |
Q |
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| T |
46357952 |
gaacacacttttatcatagtctctctataccatattttttt |
46357992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 49244617 - 49244828
Alignment:
| Q |
117 |
tttttaaccattagatcgattatggaacacacttttatcatagtctctctacactatatctttttacacaccatcatcaattatcattctctctcctcca |
216 |
Q |
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||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
49244617 |
tttttaaccattagatcaactaaggaacacgcttttatcatagtctctctacactatat-tttttacacac-atcatcaattatcattccctcccctcca |
49244714 |
T |
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| Q |
217 |
tcccactcacctccatgagcaacaacataggattgatagtcccgaattctcattcttcccttgtttgtacttttcattgttaatttaatttctttaaaat |
316 |
Q |
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| T |
49244715 |
tcccactcacctccatgagcaacaac------tccacggtcccaaattctatttcttcccttgtttgtacttttcattgttaatttaatttctttaaaat |
49244808 |
T |
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| Q |
317 |
ggaataaaaaacaagaaagt |
336 |
Q |
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| T |
49244809 |
aaaataaaaaacaagaaagt |
49244828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 49244840 - 49244884
Alignment:
| Q |
400 |
aggttatggaaatctagaaaccctttgttcttcatctttgtttct |
444 |
Q |
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| T |
49244840 |
aggttatggaaatctggaaaccctttgttcttcatctttgtttct |
49244884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 4603468 - 4603516
Alignment:
| Q |
18 |
ttgatataatcaacacagtactagatgggatacacataaactctttttg |
66 |
Q |
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| T |
4603468 |
ttgatataatcaacatagtactagatgggatacatataaactttttttg |
4603516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 23105 - 23033
Alignment:
| Q |
100 |
catcataggaaagttactttttaaccattagatcgattatggaacacacttttatcatagtctctctacacta |
172 |
Q |
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|||||| ||||||||| |||| ||||||||||| | || |||||| | ||||||||| ||||||| |||||| |
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| T |
23105 |
catcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacacta |
23033 |
T |
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