View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2686_high_5 (Length: 492)
Name: NF2686_high_5
Description: NF2686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2686_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 4555198 - 4555649
Alignment:
| Q |
18 |
aagaaggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtat |
117 |
Q |
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| T |
4555198 |
aagaaggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtat |
4555297 |
T |
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| Q |
118 |
ggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaa |
217 |
Q |
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| T |
4555298 |
ggcagaaaagtggaagttgtccaaagggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaa |
4555397 |
T |
|
| Q |
218 |
gaaaccaagcttcagaaaagttaatcagcttaatcagaacgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctac |
317 |
Q |
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| T |
4555398 |
gaaaccaagcttcagaaaag---------ttaatcagaatgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctaa |
4555488 |
T |
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| Q |
318 |
aaaatgttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaat |
417 |
Q |
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| T |
4555489 |
aaaatgttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaat |
4555588 |
T |
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| Q |
418 |
tgaattcaaaatctatactcgaaatgagtcgtctgatttttatctaattaacgatgatgtc |
478 |
Q |
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| T |
4555589 |
tgaattcaaaatttatactcggaatgagtcgtctgatctttatctaattaacaataatgtc |
4555649 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 47947941 - 47947884
Alignment:
| Q |
116 |
atggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaag |
173 |
Q |
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| T |
47947941 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
47947884 |
T |
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